Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23070 290 / 2e-98 Thymidine kinase (.1) AT3G07800 281 / 2e-95 Thymidine kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038804 [exp] 466 / 5e-160 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012347 [exp] 296 / 2e-101 AT3G07800 303 / 4e-105 Thymidine kinase (.1) Lus10006394 [exp] 168 / 1e-51 AT3G07800 178 / 2e-56 Thymidine kinase (.1) Lus10016925 [exp] 51 / 1e-08 AT5G23070 58 / 1e-11 Thymidine kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G009951 [exp] 330 / 5e-114 AT3G07800 292 / 7e-100 Thymidine kinase (.1) Potri.006G015800 [exp] 319 / 1e-109 AT5G23070 306 / 8e-105 Thymidine kinase (.1) Potri.002G222300 [exp] 302 / 3e-104 AT3G07800 316 / 2e-110 Thymidine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00265 [flax] [poplar] TK Thymidine kinase
Representative CDS sequence Show only first row Show all	>Lus10039055 pacid=23150530 polypeptide=Lus10039055 locus=Lus10039055.g ID=Lus10039055.BGIv1.0 annot-version=v1.0 ATGTTCGCTATCTCGAGAATGAAGGCTCTGTTTTCTCCTACTTCGTCCCCTCACCTTCACCTTCCCATGGCGCCGGCTTCTTATGCTGCCGCCTTTTTCT CCGCAACTCCCAAATCAACCTTCATCTCCAATCCCAATCACGCAGCTCTCCCGTTGTTGCCCACTTCTTCATTTCTCAAACCCGTCATCCGTTCTTCTGG GTCGGCTCGGTTCCACAATCGGAAGATTGAACCGGCGGCGTGCCGTTCTGCGTCCTATTCCTCCGGAGAAATTCACGTCATTGTGGGTCCCATGTTCGCC GGCAAGACTACCACTCTCCTTCGGCGGATTCAGTCTGAAGATGAAAATGGCAGAAGTGTGGCTGTTGTAAAATCAGACAAGGATACAAGATATGGACTGG ACTCTATTGTTACACACGACGGTCTGAAATTGCTTTGTTGGTCTTTGCCCAAGCTGTCATTGTTCAAACAAAGTCTTGGTGTTGATGCTTACAATCAGTT GGATGTTATTGGAATCGATGAAGCTCAATTCTTTGACGACTTGTATGATTTCTGCCGTGAAGCTGCTGATCAGGATGGGAAGACTGTGATAGTAGCTGGT TTAGACGGTGATTACATGAGGAGGAGTTTCGGGGCTGTGCTGGATGTAATCCCTCTTGCGGATTCTGTCACGAAGTTAAATGCTCGCTGCGAGCTCTGCG GGAAGAGAGCGTTCTTCACCTTGCGAAAGACTGATGAAACGAAGGTGGAACTGATTGCCGGGGCTGATGTCTACATGCCTGTGTGCAGGAAGCATTTTGT CAGTGGACAAGCAGTTGTGGAAGCTACAAAAGCTGTTGTAGAAGAATCTCAGAAGGTGCAAGTAGGATAG
AA sequence Show only first row Show all	>Lus10039055 pacid=23150530 polypeptide=Lus10039055 locus=Lus10039055.g ID=Lus10039055.BGIv1.0 annot-version=v1.0 MFAISRMKALFSPTSSPHLHLPMAPASYAAAFFSATPKSTFISNPNHAALPLLPTSSFLKPVIRSSGSARFHNRKIEPAACRSASYSSGEIHVIVGPMFA GKTTTLLRRIQSEDENGRSVAVVKSDKDTRYGLDSIVTHDGLKLLCWSLPKLSLFKQSLGVDAYNQLDVIGIDEAQFFDDLYDFCREAADQDGKTVIVAG LDGDYMRRSFGAVLDVIPLADSVTKLNARCELCGKRAFFTLRKTDETKVELIAGADVYMPVCRKHFVSGQAVVEATKAVVEESQKVQVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23070			Thymidine kinase (.1)		Lus10039055 [exp]	0	1
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	3.0	0.8598
AT4G12060			Double Clp-N motif protein (.1...		Lus10031116 [exp]	5.2	0.8376
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10037398 [exp]	5.7	0.8399
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	8.7	0.8300
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10025022 [exp]	9.4	0.8147
AT3G61530		PANB2	Phosphoenolpyruvate carboxylas...		Lus10010142 [exp]	9.8	0.8293
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	12.0	0.8124
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	18.7	0.8154
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10003290 [exp]	19.3	0.8344
AT5G60030			unknown protein		Lus10023334 [exp]	27.6	0.7925

Compare expression of checked genes

Lus10039055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.