Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64320 805 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 344 / 1e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 339 / 3e-105 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 327 / 2e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 323 / 5e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 319 / 5e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 318 / 9e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 310 / 1e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 310 / 2e-95 RPF2 rna processing factor 2 (.1) AT1G63330 306 / 1e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038804 [exp] 515 / 1e-171 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 338 / 6e-105 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 335 / 1e-103 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 328 / 9e-101 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 322 / 4e-99 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 316 / 6e-97 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 313 / 5e-96 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 313 / 2e-94 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 316 / 3e-94 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015900 [exp] 953 / 0 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 349 / 7e-109 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 335 / 2e-103 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 328 / 1e-101 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 326 / 1e-100 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 324 / 2e-99 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G148700 [exp] 314 / 2e-96 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 318 / 9e-95 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 309 / 1e-94 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 308 / 2e-94 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039056 pacid=23150519 polypeptide=Lus10039056 locus=Lus10039056.g ID=Lus10039056.BGIv1.0 annot-version=v1.0 ATGTTAAGAAGAAGATCATGCGTTGTTTCATATGGCAGCATTCACTTGAAATTCTTCCAAAGAGCCAATTCCTCCCCTGTTTTGGTTCGCTGTTTCTCTG ATTCTAACTTGGAAATTGAGGAGGAGACTGAATGGGAAAGACTTCTTAAACCATTTGACCTCAAAGAGCTTCGGAGATGTATAAGTAATAGAATCACTCC ACTGCAACTCTGCAAGCTGCTTCGTTTGCCTCTTGATGTTTCGGTTTCGATGCAGCTATTCCAACGGGTTGGTGCGCAGAAGGGATACGCACACACAATT GATGTGTACTACGCTTTGATTGATAAGCTTGGTGCTGCTGGAGACTTCAAATCTGTGGATAGGCTATTAGCGCAAATGAAGGGGGAAAGGATGGCTTTCA ATGAGTCTTTATTCATTATGATTATGAAACACTATGGGAGAGCTGGTTTCCCGGGGCAAGCCACCAGGTTGTTGCTTGATATGAAGGATATTTATTCTTG TGCAGTGACATTCAAGTCTTACAATGTCGTACTCGAGGTACTCGTAGCTGGAAATTGCCCTATCGTCGCATCCAATGTGTTCTACGATATGTTGAGTCGA GGTATCCCGCCCAATGTCTACACTTTTGGCGTGGTGATGAAGGCACTTTGTATGGTTAATGAAGTGGACAATGCTTGTTCTTTGCTTAGAGACATGACCA AGCACGGATGTGTTCCGAATTCGGTAGTTTACCAGACGTTGATACACGCTCTTTGTAAACGAGATAGAGTCGATGAAGCTTTGAAGCTCTTGGAAGAGAT GTTCCTCATGGGTTGTAAACCAGATGTTGATACCTTCAATGATGTCATTTACGGGTTGTGTAGGCTGAAACGTATCCACGAGAGTGCGAAATTGGTTGAT CGGATGCTTCTGCGCGGGTTTACCCCTAATGCTGTAACCTATGGGTATCTAATGGATGGTTTGTGTAGTGCAGGGCAAGTCGACAAAGCCCGTGCTTTAC TAAACGAAGTGCCGGATCCGAGTATTCTCCACTTGAATATGGTCATGAATGGGTATGTGAAGAGTGGTAGACTGGATGAGGCGAAAGCATTTCTCCGTGA GAAAATGCTGGAGAGTAGCTTTGTCCCGGACATATTTACATTCAACATTCTTATTCACGGTCTATGCAGGAAGGGTTTTCTCGGTTCTGCTCTTGGAGTT GTTGAGGAAATGACTGGGAAAGGTTGTCAACCTAACGTGAACACTTACACAATATTGATCGACGGTTTCTGCAAGAAAGGGAAAATGGAGGAAGCTAGCC GTATATTGAACGAGATGTCTGCAAAAGGAGTTACTTTGAATACACATGGATACAACACTCTTCTGCATGCTTTATGTAAAAGTGGAAATGTATCCGAGGC TATGCACATTTTCGGTGAAATGTCGAGCAAAGGATGCAAGCCTGACATATTCACATTCAACACTCTTATATTTGGTCATTGCAAGGCCAACGATATGGAA GGTGCCTTGGGACTCTTTCATGACATGGTATTAGAGGGTGTTATTGCAGATACAGTTACTTACAATACATTAATTCAAGCTTTTCTTAGGCAAGGTGCTC TTCAGGAAGCCTTCAAGCTTTTGAACGACATGGTATTCAGAGGATGTCCCTTGGATGAAAGAACTTATAACGGTCTGATCGGAGCCCTTTGCAGAGCCGG AGCGGTGGAGAAAGGGTTAGGGTTGTTTGAGGAAATGACAAGGAAGGATTTGGTTCCAAGCAATGTATCGGTCAACATATTGATCAATGGCCTCTGCATT GCGGGAAATATAAATAATGCGATGGAGCTTCTGAGGGACATGATTCATCGAGGTATGGAACCAGACATAGTGACTTATAACAGCCTGATTAATGGTTTCT GCAAGATAGGACATATCAAGGAGGCTTTGAATATCTTTCAGAGAGTGATGGGTGAAGGCATACAGCCCGATGTGGTGACTTATAATACTCTGATTAGCGG GCACTGCAGAAAGGGGATGATTGATGATGCATGTTTGCTTCTAGGTAGATGTGTTGAAAATAAGTTTGTACCGGATCATGTGACGTGGAACATCTTAGTT CCTAAGGTTGTTAAGGATGGTGGCAGAGAGAATCTTGTATTTTCAGGTGCTGTATCTGAAGGTCATAAAACATCTCCCTTAAAGAAACCCACTGCAGAGG TTCCTACAAGTACAAAGTCCTTGACTTTTATCTCTGAAGGTCATAGAACACCTCTCCCAGGATCCTTCATGGTAACCACCAATCTACCAACTCATCCACC TATGCTTCTTGTTTCTCGTACCACTCGACTTTCTATTTAG
AA sequence Show only first row Show all	>Lus10039056 pacid=23150519 polypeptide=Lus10039056 locus=Lus10039056.g ID=Lus10039056.BGIv1.0 annot-version=v1.0 MLRRRSCVVSYGSIHLKFFQRANSSPVLVRCFSDSNLEIEEETEWERLLKPFDLKELRRCISNRITPLQLCKLLRLPLDVSVSMQLFQRVGAQKGYAHTI DVYYALIDKLGAAGDFKSVDRLLAQMKGERMAFNESLFIMIMKHYGRAGFPGQATRLLLDMKDIYSCAVTFKSYNVVLEVLVAGNCPIVASNVFYDMLSR GIPPNVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALCKRDRVDEALKLLEEMFLMGCKPDVDTFNDVIYGLCRLKRIHESAKLVD RMLLRGFTPNAVTYGYLMDGLCSAGQVDKARALLNEVPDPSILHLNMVMNGYVKSGRLDEAKAFLREKMLESSFVPDIFTFNILIHGLCRKGFLGSALGV VEEMTGKGCQPNVNTYTILIDGFCKKGKMEEASRILNEMSAKGVTLNTHGYNTLLHALCKSGNVSEAMHIFGEMSSKGCKPDIFTFNTLIFGHCKANDME GALGLFHDMVLEGVIADTVTYNTLIQAFLRQGALQEAFKLLNDMVFRGCPLDERTYNGLIGALCRAGAVEKGLGLFEEMTRKDLVPSNVSVNILINGLCI AGNINNAMELLRDMIHRGMEPDIVTYNSLINGFCKIGHIKEALNIFQRVMGEGIQPDVVTYNTLISGHCRKGMIDDACLLLGRCVENKFVPDHVTWNILV PKVVKDGGRENLVFSGAVSEGHKTSPLKKPTAEVPTSTKSLTFISEGHRTPLPGSFMVTTNLPTHPPMLLVSRTTRLSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10039056 [exp]	0	1
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	1.4	0.8420
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	1.4	0.7737
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	1.7	0.7660
AT5G10710			unknown protein		Lus10026943 [exp]	5.3	0.7156
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10023549 [exp]	6.6	0.7651
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10043417 [exp]	10.9	0.7376
AT2G22530			Alkaline-phosphatase-like fami...		Lus10035939 [exp]	12.5	0.6982
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	17.7	0.7421
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	19.4	0.6979
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	20.5	0.7451

Compare expression of checked genes

Lus10039056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.