Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35740 157 / 3e-50 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G04910 129 / 1e-39 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT4G29360 100 / 2e-25 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G05430 94 / 5e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G29380 97 / 9e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G79480 97 / 2e-24 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT5G63240 91 / 3e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT3G58100 92 / 5e-24 PDCB5 plasmodesmata callose-binding protein 5 (.1) AT3G13560 96 / 2e-23 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G30933 90 / 8e-23 Carbohydrate-binding X8 domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038801 [exp] 182 / 4e-60 AT5G35740 146 / 1e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10012324 [exp] 148 / 7e-47 AT5G35740 164 / 8e-54 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10001167 [exp] 137 / 1e-42 AT5G35740 150 / 3e-48 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10001740 [exp] 103 / 2e-29 AT5G35740 111 / 2e-33 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10039179 [exp] 99 / 1e-24 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10023276 [exp] 94 / 1e-24 AT4G05430 146 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10015151 [exp] 98 / 2e-24 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002466 [exp] 94 / 2e-24 AT5G67460 175 / 1e-53 O-Glycosyl hydrolases family 17 protein (.1) Lus10004600 [exp] 95 / 7e-24 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G016800 [exp] 167 / 2e-54 AT5G35740 156 / 1e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.014G164600 [exp] 152 / 2e-48 AT5G35740 179 / 8e-60 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G078500 [exp] 98 / 4e-25 AT1G29380 154 / 1e-44 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G006500 [exp] 98 / 2e-24 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G353400 [exp] 96 / 2e-24 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.003G218500 [exp] 97 / 3e-24 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.017G055700 [exp] 92 / 8e-24 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.008G082900 [exp] 95 / 1e-23 AT1G79480 159 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.002G059600 [exp] 92 / 2e-23 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.019G012000 [exp] 89 / 7e-23 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10039059 pacid=23150458 polypeptide=Lus10039059 locus=Lus10039059.g ID=Lus10039059.BGIv1.0 annot-version=v1.0 ATGGAGAAACGTCCCTCGTTCCGCTCCAAATCTGTACGGAACAAGTGCTTTTGGATAATCAGTTTTATCTCTCTCCCGCAAAGTTCCTGCTGTATGTATT CCACAAACGCGTGCGGAATCGTAGCGCTACTCTCGAGCTGCTCCGGACCCCCACGAAATGGGGAGCGATTGGCGGATGGAGGTTTCGAGGCGAAGGAATG GTGCATAGCGGACGAGCAGACACCAGACGACGAGTTGCAGAATGCGCTAGATTGGGCGTGTGGGAAAGTGGGAGGTGCAGATTGCTCCAAGTTGCAGAAG AAGCAGCCATGTTTCCTCCCCAACACCATAAGGGATCATGCCTCTTTTGCCTTCAACAGCTACTACCAGAGGTTTAAGAGGCAAGGGGCCACCTGTTACT TCAATTCTGCTGCCATGGTCACCGACCTCGATCCAAGCCAAGGTTCATGCAAATATGACTACTTGCCTTGA
AA sequence Show only first row Show all	>Lus10039059 pacid=23150458 polypeptide=Lus10039059 locus=Lus10039059.g ID=Lus10039059.BGIv1.0 annot-version=v1.0 MEKRPSFRSKSVRNKCFWIISFISLPQSSCCMYSTNACGIVALLSSCSGPPRNGERLADGGFEAKEWCIADEQTPDDELQNALDWACGKVGGADCSKLQK KQPCFLPNTIRDHASFAFNSYYQRFKRQGATCYFNSAAMVTDLDPSQGSCKYDYLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	0	1
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	1.0	0.9550
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	3.7	0.9326
AT2G37925		COPT4	copper transporter 4 (.1)		Lus10021108 [exp]	4.5	0.9150
AT4G16790			hydroxyproline-rich glycoprote...		Lus10004758 [exp]	5.9	0.9090
AT1G68430			unknown protein		Lus10034103 [exp]	6.0	0.9111
AT2G27140			HSP20-like chaperones superfam...		Lus10003356 [exp]	9.0	0.9231
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	10.2	0.9012
AT1G62760			Plant invertase/pectin methyle...		Lus10004327 [exp]	10.4	0.8809
AT4G16640			Matrixin family protein (.1)		Lus10004728 [exp]	11.0	0.9050
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	11.4	0.9131

Compare expression of checked genes

Lus10039059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.