Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35760 177 / 3e-56 Uncharacterised protein family (UPF0497) (.1) AT4G16442 147 / 7e-45 Uncharacterised protein family (UPF0497) (.1) AT4G25830 59 / 5e-11 Uncharacterised protein family (UPF0497) (.1) AT3G14380 43 / 5e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038800 [exp] 297 / 1e-103 AT2G35760 243 / 2e-82 Uncharacterised protein family (UPF0497) (.1) Lus10019999 [exp] 69 / 4e-14 AT4G25830 154 / 2e-47 Uncharacterised protein family (UPF0497) (.1) Lus10015528 [exp] 63 / 9e-12 AT4G25830 108 / 2e-29 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G016900 [exp] 210 / 2e-69 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 206 / 1e-67 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.018G094500 [exp] 70 / 8e-15 AT4G25830 128 / 9e-38 Uncharacterised protein family (UPF0497) (.1) Potri.008G205000 [exp] 47 / 1e-06 AT3G06390 130 / 4e-38 Uncharacterised protein family (UPF0497) (.1) Potri.010G208300 [exp] 45 / 6e-06 AT5G54980 176 / 2e-56 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10039060 pacid=23150647 polypeptide=Lus10039060 locus=Lus10039060.g ID=Lus10039060.BGIv1.0 annot-version=v1.0 ATGAGTTATTTGGGAGTTGGGGTTAGTCCTGGTAATGTTCCAGTCTACCATGGGAAAAGCCTTAAGGTGATTGATAGGAGAGTGAGGGGGTCGGAGCTGG TCCTGAGGTGCTTGACTTGTGTTCTTGGTGTGGTCTGTATTGTTCTTGTTGTTACTGATACTCAAGTGAAGGAGTTCTTCTCCATTCAGAAGAGAGCTAG CTACACTGATGTCAAAGCCATGGTATTTCTGGTTATAGCTTTTGGGATAGCAGCAGCATACTCGTTTGTGCAGGTAGTGAGGTGTGTTGTGAGTATGGTT AGAGGGGATGTGCTGTTCAACAAGCCCTTGGCTTGGATCATCTTCTCTGGAGACCAGGCGATGGCATACCTGACAGTGGCCGCATTGGCAGCTACGATCC AGTCATCGGTGTTTGCTGAAACAGGACAGTCAGAGCTGCAATGGATGAAGACATGCGATATGTATGCAAAGTTCTGCACCAGAGCTGGAGAAGGTGTGGC AGGTGCAGTCCTAGCCTGCCTTAGCATGGTCCTGGTTTCGTGCATATCGGCCTTCGGACTCTTCAGGCTGTACAACAGCAGTAACAAGGGTAGTAAGAGT GAGGCTAGGTGGTAG
AA sequence Show only first row Show all	>Lus10039060 pacid=23150647 polypeptide=Lus10039060 locus=Lus10039060.g ID=Lus10039060.BGIv1.0 annot-version=v1.0 MSYLGVGVSPGNVPVYHGKSLKVIDRRVRGSELVLRCLTCVLGVVCIVLVVTDTQVKEFFSIQKRASYTDVKAMVFLVIAFGIAAAYSFVQVVRCVVSMV RGDVLFNKPLAWIIFSGDQAMAYLTVAALAATIQSSVFAETGQSELQWMKTCDMYAKFCTRAGEGVAGAVLACLSMVLVSCISAFGLFRLYNSSNKGSKS EARW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35760			Uncharacterised protein family...		Lus10039060 [exp]	0	1
					Lus10004133 [exp]	4.5	0.8201
AT1G53035			unknown protein		Lus10018600 [exp]	4.5	0.7947
AT2G35760			Uncharacterised protein family...		Lus10038800 [exp]	5.7	0.7973
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	6.1	0.8232
AT3G61880		CYP78A9	cytochrome p450 78a9 (.1.2)		Lus10017334 [exp]	6.9	0.7751
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10039021 [exp]	11.0	0.7635
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039366 [exp]	11.4	0.7842
					Lus10015131 [exp]	11.7	0.8112
AT3G18050			unknown protein		Lus10027253 [exp]	12.5	0.7885
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	13.0	0.8020

Compare expression of checked genes

Lus10039060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.