Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16440 696 / 0 ferredoxin hydrogenases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038798 [exp] 867 / 0 AT4G16440 614 / 0.0 ferredoxin hydrogenases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G017000 [exp] 757 / 0 AT4G16440 722 / 0.0 ferredoxin hydrogenases (.1) Potri.016G008700 [exp] 743 / 0 AT4G16440 725 / 0.0 ferredoxin hydrogenases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02256 [flax] [poplar] Fe_hyd_SSU Iron hydrogenase small subunit PF02906 [flax] [poplar] Fe_hyd_lg_C Iron only hydrogenase large subunit, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039061 pacid=23150486 polypeptide=Lus10039061 locus=Lus10039061.g ID=Lus10039061.BGIv1.0 annot-version=v1.0 ATGTCGAACAAGTTCTCGCCGACGCTAAGGATTGGGGATCTCAACGACTTCATAGCTCCGTCTCAGGCTTGTGTGGTGTCTTTGAAGGGGATCAAGGCTA ATACTAATATCAAAACGCCTGATAAACCTGAGGTTGCAGTTGGGATCAATCGGCAGTCGGAGCCGGTTAAGATTTCCCTCAAAGATTGTTTAGCATGCAG TGGGTGCATAACATCAGCAGAGACAGTAATGCTGGAGAAGCAGAGTTCGGATGAATTCCTGTCTAATATTGATAAAGGAAAAGCTTTAATTGTTTCTCTT TCACCACAGTCGAGAACTTCTCTCGCTGTTCATTTTGGTCTTTCCCAAGTTCAGGTCTTCAGGAAACTCACAACGTTTTTCAAGTCCTTGGGAGTAAAGG CCGTCTTTGATACAAGTTGTAGCAGAGATTTGACACTAATTGAGGCTTGTAATGAGTTTGTTAGTCGATTTAAAGAAAGCTCGTGCGAAGCTGATAAGTC TAAAGTATCGCTGCCTATGCTTTCATCTGCATGCCCAGGTTGGATTTGCTATGCTGAGAAACAACTAGGATCATATATTCTCCCTTATATATCCTCTGTC AAGAGTCCCCAGCAAACAATTGGAGCCATTATAAAGCATCATGTATGCCATAAAATGGGTCTTAGGCCGGATGATATCTACCATGTCACTGTCATGCCCT GTTATGATAAGAAGCTTGAGGCTGCAAGGGATGACTTCAGTTTTCAACTGGAAGAAACGGTACCAACTGGTCACAGCGATATAAGAATTACAGAGGTAGA TTCGGTTTTGACATCTGGAGAAATTCTGGATTTGATAAAGTTGAAAGCAGTGGATTTTGCAGCCCTGGAAGAATCCCCTCTCGACAGATTGTTGACTAAT GTTGATGAACAAGAGCATCTCTATGGGGTAGGGGGCAGTTCTGGTGGTTATGCAGAGACAATTTTCCGTTATGCTGCTAAGACAGTATTTGACCGAGAAA TTGAAGGGCCACTTGAGTTCAAGACTATAAGAAATACAGATTTTCGTGAAGTATCTCTCACAGTGGATGAAAAAGTTGTGTTGAAGTTTGCCCTATGTTA TGGTTTCCAAAACCTGCAAAATATTGTAAATAAAGTGAAGACTAAAAGATGTGATTACCATTTTGTGGAGGTTATGGCGTGCCCTTCAGGTTGCTTGAAT GGTGGTGGTCAAATTAAACCAACGCAGAGGCCTACTCCCAAGGAAATGAAGGAATTGCTTAGGTCGACAGAAGCCATTTACATGGAAAATGTTCGGAATG CGGAGCCACATAACAATCCTATCGTCAGAGGATTGTATGAAGAATGGCTTGGACAACCCGGTTCGGAGAAAGCTAAAAGATACATGCACACAGAGTATCA TCCCCTGGTCAAGAGTATAACTGCCAAGTTACATGACTGGTAA
AA sequence Show only first row Show all	>Lus10039061 pacid=23150486 polypeptide=Lus10039061 locus=Lus10039061.g ID=Lus10039061.BGIv1.0 annot-version=v1.0 MSNKFSPTLRIGDLNDFIAPSQACVVSLKGIKANTNIKTPDKPEVAVGINRQSEPVKISLKDCLACSGCITSAETVMLEKQSSDEFLSNIDKGKALIVSL SPQSRTSLAVHFGLSQVQVFRKLTTFFKSLGVKAVFDTSCSRDLTLIEACNEFVSRFKESSCEADKSKVSLPMLSSACPGWICYAEKQLGSYILPYISSV KSPQQTIGAIIKHHVCHKMGLRPDDIYHVTVMPCYDKKLEAARDDFSFQLEETVPTGHSDIRITEVDSVLTSGEILDLIKLKAVDFAALEESPLDRLLTN VDEQEHLYGVGGSSGGYAETIFRYAAKTVFDREIEGPLEFKTIRNTDFREVSLTVDEKVVLKFALCYGFQNLQNIVNKVKTKRCDYHFVEVMACPSGCLN GGGQIKPTQRPTPKEMKELLRSTEAIYMENVRNAEPHNNPIVRGLYEEWLGQPGSEKAKRYMHTEYHPLVKSITAKLHDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16440			ferredoxin hydrogenases (.1)		Lus10039061 [exp]	0	1
AT2G15630			Pentatricopeptide repeat (PPR)...		Lus10022128 [exp]	2.6	0.7430
AT5G35840		PHYC	phytochrome C (.1)		Lus10006389 [exp]	9.3	0.7643
AT4G32350			Regulator of Vps4 activity in ...		Lus10023635 [exp]	14.2	0.7508
AT3G12590			unknown protein		Lus10001698 [exp]	23.7	0.7504
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10022240 [exp]	29.9	0.5972
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	35.1	0.7471
AT5G19420			Regulator of chromosome conden...		Lus10009701 [exp]	37.7	0.7417
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	41.0	0.7435
AT5G04610			S-adenosyl-L-methionine-depend...		Lus10003963 [exp]	45.8	0.7054
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10002597 [exp]	52.8	0.6961

Compare expression of checked genes

Lus10039061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.