Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17240 222 / 3e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038797 [exp] 625 / 0 AT4G17240 251 / 1e-80 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G017200 [exp] 360 / 1e-122 AT4G17240 241 / 9e-77 unknown protein Potri.016G008400 [exp] 351 / 5e-119 AT4G17240 222 / 2e-69 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039062 pacid=23150428 polypeptide=Lus10039062 locus=Lus10039062.g ID=Lus10039062.BGIv1.0 annot-version=v1.0 ATGGCGTCCCGCTACAACTCCTACGACTCCACCCGCTCTTCCGCCTCTTCATTCATCTCAGACCCCGCCTCCTCCGCTGAATTCAACACTCCTTCTTCAA GAGCTCTCGTCAAATCAAAGCCCTCATCCGATCTCTCCCAATTAAAACCAGCGTCCGCCAAATCCAAGCCCACCACAACCCACAATCTGTCCGCGATGGT CAAGAAGTTCATGGAGAAGAAGAAGCCCACCAATCCCACTGCTACCAGAGGCTCGTCCAGAGGAAACCCACCTGGTTTCGTCATTCCGGCCGATCTGATC GCCGAGGACTTGAAAAAGACGGCGAGGAAAGCAAGCCCCGGGTTAGGCGGGTTGCAGAAGAAGCTGTTTGGGAAGGAGAAGAGGCTGCAGAAGGAAGTCA AGGCTTTGACGGAGGTCAAAGGGTGTAATGGTAATGTTGCCAATACGAGAACGCTGGCTATGGTTTTGAGGAGCGAGAGGGAGCTTTTGTGTGCCAATAA GGAGATGGAGGCTGAGGTTTCCGAGCTCAGATTGATCCTCGAGACCAAGAACGGAGAGGTGGAGAAATTGAAGGATTTGTGTCTGAAGCAGAGGGAGGAG ATTAAATCGTTGAAGAACGCAGTACTGTTTCCTGATGTGATGAACTCTGAGCTTCAAGATGTGCTGGAGCAGCAAGGTTCGGAGTTGAAACAGGCCAAAC AGATCATCCCGAGTTTACAGAGGCAGGTCACTTCTCTCACTGGCCAGTTACAATGCCTCGCTGAGGATCTTGCTGAGGTGAAGGCTGCGAAATACGGAAG TGTTCGTGGTAGTAGCTCGCCAAAGACGCCCTCGTACGATTTCCAAGGGTCTGCAAATTCCCTGGACTTCAGCTCTTGTGGTGCTACAACGCCAGGCAGC CCAGATGAGATGTTCGTCAAGGATCTGAATCCTTGTTTAACGCCTTATGGTGCTAAAACAAAATCTAAGGAATTTGATGAGATGGGTTATGATTGTGAAT CTTCATTTGAAGAATATATGCCAGAGAACACCATGCAAATTTCGGATGAGCTGACTTTCAGTTCCAGTCTCAGGAAGCTGTCCAGAAGCTCAGACCGCTA TCAAAGTTCCAATGCAGGGATTGCAGCGGCTAGAGCTGCTCGGAGATCGGATGAAAGCAAGTACAGACTTGGGAAGCAAATTTGCCAAAGAGTTTCATGA
AA sequence Show only first row Show all	>Lus10039062 pacid=23150428 polypeptide=Lus10039062 locus=Lus10039062.g ID=Lus10039062.BGIv1.0 annot-version=v1.0 MASRYNSYDSTRSSASSFISDPASSAEFNTPSSRALVKSKPSSDLSQLKPASAKSKPTTTHNLSAMVKKFMEKKKPTNPTATRGSSRGNPPGFVIPADLI AEDLKKTARKASPGLGGLQKKLFGKEKRLQKEVKALTEVKGCNGNVANTRTLAMVLRSERELLCANKEMEAEVSELRLILETKNGEVEKLKDLCLKQREE IKSLKNAVLFPDVMNSELQDVLEQQGSELKQAKQIIPSLQRQVTSLTGQLQCLAEDLAEVKAAKYGSVRGSSSPKTPSYDFQGSANSLDFSSCGATTPGS PDEMFVKDLNPCLTPYGAKTKSKEFDEMGYDCESSFEEYMPENTMQISDELTFSSSLRKLSRSSDRYQSSNAGIAAARAARRSDESKYRLGKQICQRVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17240			unknown protein		Lus10039062 [exp]	0	1
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10028104 [exp]	1.4	0.9261
AT2G33400			unknown protein		Lus10011782 [exp]	1.4	0.9219
AT1G23790			Plant protein of unknown funct...		Lus10013006 [exp]	1.7	0.9190
AT1G31335			unknown protein		Lus10036190 [exp]	3.5	0.9131
AT3G07800			Thymidine kinase (.1)		Lus10012347 [exp]	11.2	0.9107
AT1G03470			Kinase interacting (KIP1-like)...		Lus10005933 [exp]	13.0	0.8992
AT5G48660			B-cell receptor-associated pro...		Lus10011842 [exp]	16.9	0.8411
AT2G33400			unknown protein		Lus10023739 [exp]	17.8	0.8557
AT3G57060			binding (.1.2)		Lus10039012 [exp]	18.0	0.9110
AT1G31335			unknown protein		Lus10038328 [exp]	22.4	0.8886

Compare expression of checked genes

Lus10039062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.