Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 379 / 4e-126 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26310 372 / 1e-123 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26320 372 / 2e-123 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26330 368 / 8e-122 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G48280 365 / 8e-121 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48270 365 / 8e-121 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48300 363 / 2e-120 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT3G48310 361 / 3e-119 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT5G25120 355 / 1e-116 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT1G13080 353 / 3e-116 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038796 [exp] 756 / 0 AT3G26300 364 / 5e-121 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10012879 [exp] 572 / 0 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10031674 [exp] 555 / 0 AT3G26300 399 / 3e-134 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 457 / 1e-156 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 440 / 7e-150 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10042815 [exp] 431 / 3e-146 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030924 [exp] 429 / 2e-145 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10040120 [exp] 426 / 3e-144 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10002885 [exp] 425 / 1e-143 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 440 / 6e-150 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 437 / 1e-148 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 428 / 2e-145 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G086000 [exp] 427 / 5e-145 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.011G130800 [exp] 427 / 7e-145 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 425 / 7e-144 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.012G090000 [exp] 424 / 8e-144 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.012G089900 [exp] 423 / 3e-143 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.007G074900 [exp] 422 / 7e-143 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 418 / 3e-141 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10039063 pacid=23150294 polypeptide=Lus10039063 locus=Lus10039063.g ID=Lus10039063.BGIv1.0 annot-version=v1.0 ATGGCTTCATCCAGTACAATGATAATCCGTATGCCAATGTCATTTCCATCATCAAACAATCTCACGTCTCCACGTCGACTTAAACTGGCGATCTCCTCTG CTTCTTCTTCTTTGAAAAGCAGTAGCTGCAATATGAGCAAAAGAAGTGATGATGATGATGATCAAGAAACTAGTAATAAGCTACAATACCACCACCACCG TCTTCCTCCAGGACCAGTGAAACTCCCTCTGATCGGGAATTTACACAATTTGTTCATGATGGGCAGCAGATCGTCTCTCCCACACCACGCCCTCCGATAC ATGGCCGACGAATACGGGGATCTCCTCCACCTCCAGCTCGGGGAAGTGTCGGCCGTGGTGGTTTCTTCGGCGAAGATGGCGAGGGAGGTAATGAAGACCC ATGACCATATTTTCGCTGATAGGCCTCGGATTCTGGCGGTGGATATTGGGATTTGGGGTAGCCAAGACATCGCCTTCTGCCCACTCGGCGATTACTGGAG GCAGATGAAGCGCATTTCCATCACTGACCTTCTCGGAGCAAAAAAGGTTCAATCTTTCGCCCCAATCCGGGAAGCAGAGGTCTCAAATCTGATAAGCACA ATTCGACGCTCAGCCAAACAAGGACTAAATCCAATAAACATCAGCGAGAAGATTTACAGTCTATTCAACGTCATAATCTGCAAGTCGGCGTTTGGTTCCC ATGAGTGGATAGAGGAAGACATAATCAACTCCATGCAAGAGGCTGCCATGGTGGCCGGAGGGTTTCACATGCTCGATTTCTACCCTTCTCTGGAGTTCTT GCATGCCATCAGTGGGTTGAAATCCAGAATCCTTAAACTTAGAGACCATAAAGATGGGATTCTGGACCGAGTCATCGAAGAACACAAGCAGAAAATGATG GAGAGACGGCAGAACGGAGAATCCTTGGATGATGAGGATTTCGTGGATGTTTTCGTAAGGCTTCAAGGGGATGAAAGCTTGCAGTGTCCCATAACAAACA CCAGCATCAAAGCTGTCCTTGTGGACATGTTTGTTGTGGGGACGGACACTTCATCGGTGGCAGTAGAGTGGGCGATGTCGGAAATTATGAAAAACCCACG AGTATTAAACAAGGCGCAAAATGAGATACGACATGTCCTGAAAGGGAAAAGGGTAATTACAGAGGAAGATATACAAGGTTTGACTTATTTGAAATTAGTG ATTAAAGAGACGTTCAGACTGCACCCGTCGATACCATTGTTGATTCCGAGGGAAAGCAACCGAGATTGCGTCGTTGGAGGGTACATAATTCCTTCCGGAA CTAGGGTGATCGTCAATGCTTGGGCGATCGGGAGGGACCCTGAGACGTGGGAGGATCCGGAGAGGTTTAATCCGGAGCGGTTTGACGATGGGGAAGTCGA TTTTAGAGGAAATCATTTTGAGCTGATTCCGTTCGGAGCTGGAAGGAGGATATGTCCCGGGATTTCGTATGCGATGGCTAATATTGAGCTTCTTTTGGCG CATTTGTTGTATCATTTCGATTGGGAGCTTCCGGAGGGAGCGACGACTGAGGATTTGTGTATGAGTGAGGTCTTTGGACTAGCCGTTGGTAGGAAGAACC AGTTGCATTTGGTTGCCAAACCTGTTGACCTAGTGGATGAACCTGATTACATGAATGTTTGA
AA sequence Show only first row Show all	>Lus10039063 pacid=23150294 polypeptide=Lus10039063 locus=Lus10039063.g ID=Lus10039063.BGIv1.0 annot-version=v1.0 MASSSTMIIRMPMSFPSSNNLTSPRRLKLAISSASSSLKSSSCNMSKRSDDDDDQETSNKLQYHHHRLPPGPVKLPLIGNLHNLFMMGSRSSLPHHALRY MADEYGDLLHLQLGEVSAVVVSSAKMAREVMKTHDHIFADRPRILAVDIGIWGSQDIAFCPLGDYWRQMKRISITDLLGAKKVQSFAPIREAEVSNLIST IRRSAKQGLNPINISEKIYSLFNVIICKSAFGSHEWIEEDIINSMQEAAMVAGGFHMLDFYPSLEFLHAISGLKSRILKLRDHKDGILDRVIEEHKQKMM ERRQNGESLDDEDFVDVFVRLQGDESLQCPITNTSIKAVLVDMFVVGTDTSSVAVEWAMSEIMKNPRVLNKAQNEIRHVLKGKRVITEEDIQGLTYLKLV IKETFRLHPSIPLLIPRESNRDCVVGGYIIPSGTRVIVNAWAIGRDPETWEDPERFNPERFDDGEVDFRGNHFELIPFGAGRRICPGISYAMANIELLLA HLLYHFDWELPEGATTEDLCMSEVFGLAVGRKNQLHLVAKPVDLVDEPDYMNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10039063 [exp]	0	1
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029928 [exp]	3.2	0.6462
AT2G25760			Protein kinase family protein ...		Lus10037565 [exp]	13.3	0.6482
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10037374 [exp]	26.2	0.6303
AT3G14470			NB-ARC domain-containing disea...		Lus10008584 [exp]	34.9	0.5847
AT4G12010			Disease resistance protein (TI...		Lus10015650 [exp]	37.4	0.5853
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043264 [exp]	140.7	0.5277
					Lus10043138 [exp]	179.6	0.5171

Compare expression of checked genes

Lus10039063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.