Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02660 620 / 0 EMB2768 EMBRYO DEFECTIVE 2768, Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038795 [exp] 882 / 0 AT3G02660 664 / 0.0 EMBRYO DEFECTIVE 2768, Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G140400 [exp] 661 / 0 AT3G02660 664 / 0.0 EMBRYO DEFECTIVE 2768, Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00579 [flax] [poplar] tRNA-synt_1b tRNA synthetases class I (W and Y) CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain
Representative CDS sequence Show only first row Show all	>Lus10039064 pacid=23150318 polypeptide=Lus10039064 locus=Lus10039064.g ID=Lus10039064.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGGCGGTTGTTCCCCGGACGTTGCTCTATTCATTCCACCGCCACAGATTTTCCTTCACGCTACCAGCCTTCTTCAATCTCCACACCGGCA GCACTAGGTTGAGGTCTGCCATGGGCGTCGTCAAGCCTCGGTTCACAACGACGATCAGTTGCGTTCAATCCACCGAAGTAGTCCCCTCTGTTGTAATCGG TCGCCGCAATGTCATCGACATTTTGGAGGAAAGAGGATTGATGGAATCCCTTACTAGCGACAATCTCAGGTCCGCTTCTTCCTCCACTCCAAACCAATCT CCTCCGCTTAGGGTTTACTGCGGCTTCGATCCCACCGCCGAGAGCTTACACTTAGGCAACCTACTAGGAATCATAGTCCTCTCCTGGTTCCACCGCTGCG GCCATAACGTCGTCGCCCTGATAGGCGGCGCCACCGCTCGAATCGGCGATCCGTCCGGGAAGAGCATCGAACGTCCTGAGCTGGATGTGGAAGTTCTGCA GAGGAACATTTTAGGGATAGACAGTACGGTAACTAGGATCCTAAATTCGAGTAATGTATCATCATCATCGTTGTCGTCTTCTTTTGTGGTTATGAACAAC TACGATTGGTGGAAGGAGTTTAGGCTATTGGATTTTCTGAAGCAGGTAGGGAGATACGCTAGGGTTGGAACCATGATTGCTAAAGAGAGTGTGAAAAAGA GGCTTGATTCAGAGCAAGGAATGAGCTACACTGAGTTTACTTATCAGCTGCTGCAGGGTTACGATTTCCTTTACCTGTTCCAGAACCATGGTGTGAATGT TCAGATTGGTGGGAGTGATCAATGGGGGAACATTACTGCTGGAACTGATCTCATTAGAAAAATCCTTCAACCTCCGGAAGGCGGTGGGGGATTCGGCTTG ACATTCCCTCTTTTGCTAAAGAGCGACGGAACCAAGTTTGGGAAATCCGAAGATGGTGCCATCTGGCTTTCGCCATCCATGCTGTCTCCTTACAAATTTT ACCAGCATTTGTTCTCAGTTCCTGATTCTGATGTGATCAAGTTTCTCAAGATGCTGACTTTCTTGGACATGGCGGCAATAGAAGAGCTGGAAGCTCAAAT GCAGAGACCTGGCTCTGGCTACTTGCCTAATACCGCCCAGAAACTGCTGGCGGAAGAAGTGACGAGATTCGTCCATGGAGAAGACGGTCTTCGAGAGGCT CTGAAGGCTACAGAGGCACTGAGACCCGGAGCAGAGACGAAGTTGGATTGGAAGACGATCGAAGCCATTGCTGAGGATGTGCCTTCTTGTTCGATGGCGT ATGATCATGTTGTGGAGCTGTCTGTTATTGACCTCTCTGTTTCGTCCGGCCTGCTCGAGAGCAAATCGGCAGCTCGGAGATTGATGAAGCAAGGAGGGAT CTACTTGAATAACAACAGAGTTGACCAGGAGAGTAGAAAGATTGAGGCGGAAGATATAGTAGACGGGAAGCTTCTGCTATTATCTGCAGGAAAGAAGAAC AAGGTTGTTGTTCGCATATCTTGA
AA sequence Show only first row Show all	>Lus10039064 pacid=23150318 polypeptide=Lus10039064 locus=Lus10039064.g ID=Lus10039064.BGIv1.0 annot-version=v1.0 MAAAAVVPRTLLYSFHRHRFSFTLPAFFNLHTGSTRLRSAMGVVKPRFTTTISCVQSTEVVPSVVIGRRNVIDILEERGLMESLTSDNLRSASSSTPNQS PPLRVYCGFDPTAESLHLGNLLGIIVLSWFHRCGHNVVALIGGATARIGDPSGKSIERPELDVEVLQRNILGIDSTVTRILNSSNVSSSSLSSSFVVMNN YDWWKEFRLLDFLKQVGRYARVGTMIAKESVKKRLDSEQGMSYTEFTYQLLQGYDFLYLFQNHGVNVQIGGSDQWGNITAGTDLIRKILQPPEGGGGFGL TFPLLLKSDGTKFGKSEDGAIWLSPSMLSPYKFYQHLFSVPDSDVIKFLKMLTFLDMAAIEELEAQMQRPGSGYLPNTAQKLLAEEVTRFVHGEDGLREA LKATEALRPGAETKLDWKTIEAIAEDVPSCSMAYDHVVELSVIDLSVSSGLLESKSAARRLMKQGGIYLNNNRVDQESRKIEAEDIVDGKLLLLSAGKKN KVVVRIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	0	1
AT4G13990			Exostosin family protein (.1)		Lus10007037 [exp]	1.0	0.9105
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	1.4	0.9080
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10024866 [exp]	2.2	0.8904
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10000093 [exp]	4.0	0.8756
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	6.0	0.8952
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10013191 [exp]	6.7	0.8731
AT2G16800			high-affinity nickel-transport...		Lus10019792 [exp]	6.9	0.8713
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10029697 [exp]	7.1	0.8659
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	7.3	0.8958
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10030705 [exp]	7.7	0.8690

Compare expression of checked genes

Lus10039064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.