Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13130 40 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038793 [exp] 92 / 3e-22 AT3G13130 59 / 1e-10 unknown protein Lus10016611 [exp] 45 / 2e-05 AT3G13130 62 / 1e-11 unknown protein Lus10004415 [exp] 45 / 2e-05 AT3G13130 54 / 1e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G007400 [exp] 61 / 3e-11 AT3G13130 60 / 4e-11 unknown protein Potri.014G166900 [exp] 44 / 2e-05 AT2G04515 52 / 1e-08 unknown protein Potri.001G366500 [exp] 41 / 0.0004 AT3G13130 64 / 5e-12 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10039066 pacid=23150641 polypeptide=Lus10039066 locus=Lus10039066.g ID=Lus10039066.BGIv1.0 annot-version=v1.0 ATGGATACAGAAACCCAAGTTGACAAAATGCAATCACATCACATGATGAATAGCAGCATGAGCATGAGCATGAAGTACCATTACTTGTTGAAAAGGAGCT TACAGCTTGCGATTACACTCTCCCTCTTTTCTCTTCTCATCTGTCTCTCTACCATTAACAGCAACAGTAGAAGTAGTTATGTTGTTGTTTACTTAAATCC ATTGTTCTTGTCCTCATTCTTTACACATACTCTGGAGAGGAAGTACATGTTCCTCATCTGCAATGCCATCCTTGCTTTCCTCGCCACTACCTCCACCAGG AAAACCACCTCATCATCAGCTTTTGATCATCATGATTATGATGAAGATGTCGATTTGGTTGGATGTGAGAGTACTCATCAAGATGCTGCAATGTTTGAAG GTGATACTGAGGAGGAGGAGGAAACAGAAGAGAGCGGCGAGCTTGGTGAAGGAGATGAAGATGATGATCATGGAAGTAATGATAATGATGGGGATGAAGA TGGTAGTAAGTATAATGATGAAATTGAGGAAGAAGGAAAAGAAGAAGGGAGTTTGGAAATGGAAGAAGAAGAAGAAGGAGGGAAGAGTAGTGAAGAGATG GTGGGACATTGCAGCACGGAGGAGTTGAACAGAAAGATTGAAGATTTCATCAGGAAGATGAAACAAGAAATGAGGATTGAGTCTCAACAGCCACTTGTAG CTGCTGTCTAA
AA sequence Show only first row Show all	>Lus10039066 pacid=23150641 polypeptide=Lus10039066 locus=Lus10039066.g ID=Lus10039066.BGIv1.0 annot-version=v1.0 MDTETQVDKMQSHHMMNSSMSMSMKYHYLLKRSLQLAITLSLFSLLICLSTINSNSRSSYVVVYLNPLFLSSFFTHTLERKYMFLICNAILAFLATTSTR KTTSSSAFDHHDYDEDVDLVGCESTHQDAAMFEGDTEEEEETEESGELGEGDEDDDHGSNDNDGDEDGSKYNDEIEEEGKEEGSLEMEEEEEGGKSSEEM VGHCSTEELNRKIEDFIRKMKQEMRIESQQPLVAAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13130			unknown protein		Lus10039066 [exp]	0	1
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010189 [exp]	1.4	0.8860
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10000502 [exp]	3.6	0.8894
					Lus10016420 [exp]	4.6	0.8822
AT1G06475			unknown protein		Lus10015269 [exp]	6.9	0.8683
AT5G05260		CYP79A2	cytochrome p450 79a2 (.1)		Lus10000627 [exp]	8.4	0.8638
AT1G19900			glyoxal oxidase-related protei...		Lus10012387 [exp]	9.2	0.8589
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	10.0	0.8732
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	10.2	0.8761
AT2G38860		YLS5	Class I glutamine amidotransfe...		Lus10014721 [exp]	11.2	0.8464
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10042418 [exp]	12.1	0.8393

Compare expression of checked genes

Lus10039066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.