Plant FIBer expression Database

Lus10039068 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16400 81 / 1e-19 unknown protein
AT3G13175 49 / 2e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038791
[exp]
225 / 6e-78 AT4G16400 78 / 1e-18 unknown protein
Lus10016614
[exp]
65 / 1e-14 AT4G16400 86 / 8e-22 unknown protein
Lus10004418
[exp]
60 / 1e-12 AT4G16400 79 / 3e-20 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G007101
[exp]
94 / 4e-26 AT4G16400 96 / 3e-26 unknown protein
Potri.006G017900
[exp]
93 / 5e-26 AT4G16400 85 / 1e-21 unknown protein
Potri.001G366900
[exp]
69 / 1e-16 AT3G13175 75 / 4e-19 unknown protein
PFAM info
Representative CDS sequence
>Lus10039068 pacid=23150667 polypeptide=Lus10039068 locus=Lus10039068.g ID=Lus10039068.BGIv1.0 annot-version=v1.0
ATGTCTAATTCACACAGCAACAAACAAAACCAACCAGCAGCAGCCATGGAGAAATTTGCAGACAAAATGGTGATGCAATACAAATACCATGTTGCAGTTG
CAGCCATTGGTTGTATTCTGCTTCCTTTGATGCTGTATGCAGCTCCAAGGATGCTCACCATCCTCGCATACTTCTGGCCTCTCATGGCTTCCACAGCTGT
GTTTCTGGTCCTCATCATGGGATTCGGTGGCGTCTCGAGACTCACTAACGATTACGCGGCAGATCAGCTTCATCAGCTTGGCGGCCAGAGTACTCCAGGG
CAGGGGATCATTGATTATGTTGCTGGGCGTCCTGATTATGCTTATGAATGA
AA sequence
>Lus10039068 pacid=23150667 polypeptide=Lus10039068 locus=Lus10039068.g ID=Lus10039068.BGIv1.0 annot-version=v1.0
MSNSHSNKQNQPAAAMEKFADKMVMQYKYHVAVAAIGCILLPLMLYAAPRMLTILAYFWPLMASTAVFLVLIMGFGGVSRLTNDYAADQLHQLGGQSTPG
QGIIDYVAGRPDYAYE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G16400 unknown protein Lus10039068
[exp]
0 1
AT2G14620 XTH10, XTR14 xyloglucan endotransglucosylas... Lus10035654
[exp]
2.6 0.9547
AT5G46530 AWPM-19-like family protein (.... Lus10004587
[exp]
4.2 0.9465
AT1G23530 unknown protein Lus10030608
[exp]
6.0 0.9478
AT3G19910 RING/U-box superfamily protein... Lus10029693
[exp]
6.9 0.9403
AT5G18970 AWPM-19-like family protein (.... Lus10021949
[exp]
7.4 0.9396
AT1G79900 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC... Lus10037544
[exp]
8.7 0.8754
AT4G39810 Polynucleotidyl transferase, r... Lus10016807
[exp]
8.8 0.8957
AT1G68180 RING/U-box superfamily protein... Lus10001611
[exp]
9.7 0.9230
AT4G39810 Polynucleotidyl transferase, r... Lus10022503
[exp]
11.0 0.8510
AT5G20870 O-Glycosyl hydrolases family 1... Lus10043075
[exp]
11.8 0.9379

Lus10039068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.