Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16390 793 / 0 SVR7 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) AT5G46580 428 / 1e-140 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G31400 176 / 8e-46 GUN1 genomes uncoupled 1 (.1) AT1G74750 162 / 2e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 160 / 1e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT5G02860 155 / 4e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 155 / 4e-39 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT1G05670 140 / 2e-34 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT2G41720 139 / 3e-34 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39710 139 / 4e-34 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038788 [exp] 1351 / 0 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10004555 [exp] 418 / 3e-136 AT5G46580 960 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000897 [exp] 414 / 7e-135 AT5G46580 945 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10003657 [exp] 162 / 1e-41 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10022290 [exp] 161 / 2e-41 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10033110 [exp] 161 / 5e-41 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10033127 [exp] 159 / 3e-40 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10013894 [exp] 158 / 7e-40 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 155 / 5e-39 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G006800 [exp] 870 / 0 AT4G16390 916 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G019000 [exp] 836 / 0 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G018600 [exp] 727 / 0 AT4G16390 818 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G089600 [exp] 431 / 1e-141 AT5G46580 986 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.014G118500 [exp] 168 / 3e-43 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.002G193900 [exp] 167 / 3e-43 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.015G066400 [exp] 161 / 4e-41 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.005G050500 [exp] 154 / 2e-39 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G092100 [exp] 151 / 7e-38 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 149 / 9e-38 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039071 pacid=23150359 polypeptide=Lus10039071 locus=Lus10039071.g ID=Lus10039071.BGIv1.0 annot-version=v1.0 ATGGCGTACAGTCTCTGCGCTTCATCTTCTTCATCTTCTCTATATCAAACTCTCTGCAACTCCTTCTCTTCTCCATCTTCCAGAGACCACAAACCAAGGT CTTTATTCAAGCTCCCAACTTTCTCCTCACCTCAATCAAAACCTTCCCTGCTGCATTTCGCCGCTCAAGTCTCTTTACAGGACTCCGTCGCGCAGCAGCA GCCGTTGAAAGAGGATAACTCCAATGGAAAGTCTCCCTCTCCCGCCAAATCCTTCGTTTGGGTCAATCCCAAAAGCCCCCGAGCTACTGAGCTACGGTAC CAATCCTACGACGCTAGGTATGCTTCTCTTGTTAAAACGGCCCAGACTTTGGACTCTTGTTCGGCGGACGACACCCAAGTTCGCTCCGTTTTAAACGGCC TGGGATATCAGTTTTCGGAGCAAGGCGCCGTCGTTGTGATCAACAACATGACCAACGCCGATACGGCTTTGATTGCCCTCAGGTATTTTGTTGACAACTT GAAGTTCAAACGCCCGGAGGTTCTTTACAATGTCACGATGAAAATATTGAGGAATTCTAGGAGAATAAGTGATGCCGAGCAGCTGTTCGATGAAATGCTT CAGAGAGGGGTTGCCCCAGATAACGTCACTTTTTCCACGATAATTAGCTGCGCTAAGATGTGTAGGCTGTCCGACAAGGTTGTGGAGTGGTTTGAGAAAA TGACTAGTTACGGGGTTATCCCAGATGAACTTACGAATTGTACCATGATTGAAGCTTATGGCCGAGCTGGCGAAATGGAGAAGGCCTTGAGCTTGTATGA TCGCGCTAGAACCGAGAAATGGAAACTTAACGCTGTTACATTTGCGACGGTGATTAGGATTTACGGTATGTCGGGGAATTATGATGGGTGCTTGAATGTT TACGAAGAAATGAAGGCTCTTGGTGTTGAGCCTAATGTATTCACCTTTAACGCCTTATTGGATTCTATGGGGAGAGCAAAGAGACCTTGGACAGTCAAGA CAATCTACAAGGATATGATCCATAAGGGACTTACCCCAAATTTTCTGACCCATGCAGCACTTCTCCGTGGTTATAGTAGAGCTCGATACGGCGAGGATGC TCTTGCTGTGTATAGGGAGATGAAGGGTCAAGCTATGAATTTGAATGTAGTGCTGTACAATACCTTGATCTCCATGTGTGCTGATCTCGGCCTCGTTGAT GAGGCTACCGAGATTTTCGAGGACATGAGAAGCTCTGGGGTAGAGCCTGATGATTGGACTTTCTCATCTTTGATTACCGTATTCTCGAGTTGTGGTAGAC TTTCTGAGTTGGACAATATACTAAATGCAATGGAGAAAGCTGGGATTGAGCCTAATCTTTTCATGTTCACCTCAATTACTCAGTGCTATGGGAGAGCCGA ACGAATTGATGATGTTGTAAGGACTGTTGACAGACTCTTCGAAATGGGAATATCTCCGGATGACAGGTACTGTGGGTGTCTTCTTTCCCTGGTCGCTCAA ACTCCGATAGAGGAAGTCGGTAAACTTGTTGAATGTGTTGAGAAGGGTAATCCCAAACTTGGTTCTGTGGTAAAACACCTGCTACAAGAACAGCAGGACA ATGAGGTGCACTTTAAGGAACAAGTTGCTGAGCTATTCAGCAATTTTGATGCTGAAGTAAAGAAAGTTTATTGCAATGGCTTAATCGATCTCTGCGTCAA ATTCAACATGCGTGAAAGAGCTAACGAGTTGCTAGACCTGGGAATAAAGCTGGAGTTCTTTCACGAGCTACAGTCGAGGTCCCCAATTCAGTGGTCTCTA CAATTAAAGGGTTTATCACTGGGAGCAGGTCTGACAGCTCTAGATGTTTGGATAAAGGATTTGTCCAAGGCCCTCGAATCTGGAGAACAGCTCCCACCTC TACTCGGAATCAATACTGGGCACGGAAAACACAGTAACTCAGACAAGCACAAGGGCTTAGCCGCTCTGATAGATTCGCGCTTGAAGGAGTTGAAAGCCCC TTTCCATGACGATCCTGATAAAGCTGGTTGGTTTTTTACCACAAAGGTTGCTGCTGAGGCTTGGTTGGAAGCCATGGCTACTGCCAAGGTGTAG
AA sequence Show only first row Show all	>Lus10039071 pacid=23150359 polypeptide=Lus10039071 locus=Lus10039071.g ID=Lus10039071.BGIv1.0 annot-version=v1.0 MAYSLCASSSSSSLYQTLCNSFSSPSSRDHKPRSLFKLPTFSSPQSKPSLLHFAAQVSLQDSVAQQQPLKEDNSNGKSPSPAKSFVWVNPKSPRATELRY QSYDARYASLVKTAQTLDSCSADDTQVRSVLNGLGYQFSEQGAVVVINNMTNADTALIALRYFVDNLKFKRPEVLYNVTMKILRNSRRISDAEQLFDEML QRGVAPDNVTFSTIISCAKMCRLSDKVVEWFEKMTSYGVIPDELTNCTMIEAYGRAGEMEKALSLYDRARTEKWKLNAVTFATVIRIYGMSGNYDGCLNV YEEMKALGVEPNVFTFNALLDSMGRAKRPWTVKTIYKDMIHKGLTPNFLTHAALLRGYSRARYGEDALAVYREMKGQAMNLNVVLYNTLISMCADLGLVD EATEIFEDMRSSGVEPDDWTFSSLITVFSSCGRLSELDNILNAMEKAGIEPNLFMFTSITQCYGRAERIDDVVRTVDRLFEMGISPDDRYCGCLLSLVAQ TPIEEVGKLVECVEKGNPKLGSVVKHLLQEQQDNEVHFKEQVAELFSNFDAEVKKVYCNGLIDLCVKFNMRERANELLDLGIKLEFFHELQSRSPIQWSL QLKGLSLGAGLTALDVWIKDLSKALESGEQLPPLLGINTGHGKHSNSDKHKGLAALIDSRLKELKAPFHDDPDKAGWFFTTKVAAEAWLEAMATAKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	0	1
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	1.0	0.9696
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	2.8	0.9679
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10011108 [exp]	3.0	0.9638
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	3.5	0.9628
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	5.3	0.9505
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	5.5	0.9474
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	5.5	0.9585
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	6.0	0.9506
					Lus10005791 [exp]	6.0	0.9463
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	7.9	0.9483

Compare expression of checked genes

Lus10039071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.