Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27285 190 / 3e-58 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT2G27280 179 / 1e-52 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT1G55928 165 / 8e-49 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038787 [exp] 447 / 3e-159 AT2G27285 225 / 6e-72 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10020557 [exp] 375 / 8e-131 AT2G27285 240 / 5e-78 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10009414 [exp] 132 / 5e-37 AT2G27285 110 / 7e-29 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162500 [exp] 231 / 7e-74 AT2G27285 215 / 5e-68 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Potri.004G201300 [exp] 107 / 4e-27 AT2G27285 105 / 2e-26 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09745 [flax] [poplar] DUF2040 Coiled-coil domain-containing protein 55 (DUF2040)
Representative CDS sequence Show only first row Show all	>Lus10039072 pacid=23150673 polypeptide=Lus10039072 locus=Lus10039072.g ID=Lus10039072.BGIv1.0 annot-version=v1.0 ATGAAGAAGTACGGTTTACAGCTGAGAGTGCAGCCGTCCCAGAAACAAAAACCACCCAGGCCACCTCCTCCAAAGCTCCTAGGGTTCATGAACGATGATG ATGAAGATGAGGATAATGTCGAGCGAGACATTGCACGTCAAGCTACCAAGAAAAAGTCTCTCAAGGATATCGAGGAGCAGCATAAGAAAGCGTTGGAGGA AGACCCCTCTGTGTTTGATTATGATGGAGTATACGATGAGATGAAGCAGGCAATTGTTCGTCCACGGATTGTAGATAAGGAACAGAAAAAGTCTAAGTAT ATCGAGACTCTGAAAGCGAAAGCTATAGAAAGGGAACGCCAACAGGAGATCGTGTATGAACGAAAAATTGCTAAAGAGAGAAGCATAGATGACCATCTCT ATGCTGACAGGGATAAATATATCACAAATGGCTACAAGAGGAAACTCGCTGTACGTAACCAGTGGGAGGAAGAAGAAAGGCTCCGTGAACTCAAAGAGCA GAAAGACGATGTTACCAAGAAGAGTGATCTGAGCGACTTCTACTTCAACCTCAATAAGAATGTTGCGTATGGTGGTAAAGATGCGGAGATGAGAAGGCGA GCGAAGCAGGCTGAAACTAACAAGGCAGAGAAGCAGGATGGTGAGGAAGTATCAGCAGGAGGATCAAAGGCAACAACATCATCTGCGCTACCTGACTCCA CAAAAGCATCGGGATCTTCTTCACTAGCTAACGACGAGATACTACAAGACCATGACCCTCGAAGGCAGGGCGAATCTCCAGATCCAAAACCAGAATCCGA TAAGCCCGTCTCAGAGCCTTCAGCTACAGAGAATCAGCCGCCAGCTGCTAAGGAAGCTAATCCTGACCGTTGTAAGAGAAAGGAAGATGCAATCAATGCA GCGAAAGAGCGTCTGCTGGCACGTAAGAGAGCGAAGCTACAGCAGCAACTAGAGACTGTAGAATGA
AA sequence Show only first row Show all	>Lus10039072 pacid=23150673 polypeptide=Lus10039072 locus=Lus10039072.g ID=Lus10039072.BGIv1.0 annot-version=v1.0 MKKYGLQLRVQPSQKQKPPRPPPPKLLGFMNDDDEDEDNVERDIARQATKKKSLKDIEEQHKKALEEDPSVFDYDGVYDEMKQAIVRPRIVDKEQKKSKY IETLKAKAIERERQQEIVYERKIAKERSIDDHLYADRDKYITNGYKRKLAVRNQWEEEERLRELKEQKDDVTKKSDLSDFYFNLNKNVAYGGKDAEMRRR AKQAETNKAEKQDGEEVSAGGSKATTSSALPDSTKASGSSSLANDEILQDHDPRRQGESPDPKPESDKPVSEPSATENQPPAAKEANPDRCKRKEDAINA AKERLLARKRAKLQQQLETVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27285			Coiled-coil domain-containing ...		Lus10039072 [exp]	0	1
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	3.2	0.8749
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10030042 [exp]	4.6	0.8284
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	5.2	0.8575
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	7.7	0.8474
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	10.5	0.8271
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	10.5	0.8405
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10036919 [exp]	11.1	0.8037
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10037495 [exp]	12.2	0.7766
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	12.2	0.8443
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	13.8	0.8290

Compare expression of checked genes

Lus10039072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.