Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16380 76 / 5e-17 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G49420 58 / 8e-11 Heavy metal transport/detoxification superfamily protein (.1) AT1G51090 53 / 5e-09 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038786 [exp] 123 / 1e-35 AT1G49420 108 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10001913 [exp] 82 / 5e-19 AT4G16380 90 / 1e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10000039 [exp] 76 / 2e-17 AT4G16380 81 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G019200 [exp] 89 / 2e-22 AT4G16380 86 / 3e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019300 [exp] 87 / 6e-21 AT4G16380 94 / 1e-22 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019100 [exp] 86 / 2e-20 AT4G16380 59 / 8e-10 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018400 [exp] 82 / 9e-20 AT4G16380 81 / 9e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018901 [exp] 81 / 1e-19 AT4G16380 81 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G006700 [exp] 80 / 7e-19 AT4G16380 45 / 2e-05 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019500 [exp] 77 / 3e-18 AT4G16380 78 / 7e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019800 [exp] 74 / 2e-16 AT4G16380 82 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019400 [exp] 73 / 2e-16 AT4G16380 79 / 4e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G020500 [exp] 71 / 2e-15 AT4G16380 73 / 9e-16 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10039073 pacid=23150440 polypeptide=Lus10039073 locus=Lus10039073.g ID=Lus10039073.BGIv1.0 annot-version=v1.0 ATGGGAGGAGAATCAAAGCTCACAACTATGGTGATCAAGGTGGATCTGGACTGCCACAAGTGCCGCAAGAAGATCAAGAAAGTCCTCTGCAAAATCCCCC AGATTCAGAACCAAGTGTACGACGAGAAGGCCAATTTGGTGACGATAACAGTGTGGTGCTGCAGCCCTGAGAAGGTGAAAGACAAGATTTGCTGCAAAGG AGGAGAGTCGGTGAAGGGAATAGAGATCGTCAAACCACCGCCGGCGAAGCCGAAGGAGCCGGAAAAGCCCAAGGAGAAGCCCAAAGAGCCGGAGAAGGCT AAGGAGAAGCCCAAGGAGCCGGAAAAGCCGAAGGAAAAGCCCAAAGAGAAGCCGAAGGAACCAGAGGGGAAACCCAAGGAGAAGCCGCAAGAGATGGCAC CGAAGAAGCCGGCTGCTGCGCTAAGCAGCTTCCGGGGCGCCGGTGAACGCGACCTGGGGCGGCGGCGGCGGATATTACTGCCCGCCGGGAGCGTACAGGA AGCAGCCTGGGCAGTGCTTTAG
AA sequence Show only first row Show all	>Lus10039073 pacid=23150440 polypeptide=Lus10039073 locus=Lus10039073.g ID=Lus10039073.BGIv1.0 annot-version=v1.0 MGGESKLTTMVIKVDLDCHKCRKKIKKVLCKIPQIQNQVYDEKANLVTITVWCCSPEKVKDKICCKGGESVKGIEIVKPPPAKPKEPEKPKEKPKEPEKA KEKPKEPEKPKEKPKEKPKEPEGKPKEKPQEMAPKKPAAALSSFRGAGERDLGRRRRILLPAGSVQEAAWAVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16380			Heavy metal transport/detoxifi...		Lus10039073 [exp]	0	1
AT4G04960			Concanavalin A-like lectin pro...		Lus10015313 [exp]	1.7	0.8688
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10003605 [exp]	3.0	0.8470
AT2G46620			P-loop containing nucleoside t...		Lus10030220 [exp]	5.8	0.8783
AT2G43630			unknown protein		Lus10002105 [exp]	9.1	0.8788
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	10.2	0.8545
AT3G05320			O-fucosyltransferase family pr...		Lus10018291 [exp]	13.9	0.8514
AT2G43630			unknown protein		Lus10013892 [exp]	14.0	0.8526
AT1G11770			FAD-binding Berberine family p...		Lus10038440 [exp]	15.1	0.8213
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	17.3	0.8290
AT1G23040			hydroxyproline-rich glycoprote...		Lus10043475 [exp]	23.9	0.8447

Compare expression of checked genes

Lus10039073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.