Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50740 139 / 9e-40 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G63530 115 / 4e-30 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT3G02960 100 / 1e-25 Heavy metal transport/detoxification superfamily protein (.1) AT5G24580 83 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT2G36950 74 / 3e-15 Heavy metal transport/detoxification superfamily protein (.1) AT5G03380 62 / 5e-11 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G29000 61 / 6e-11 Heavy metal transport/detoxification superfamily protein (.1) AT5G60800 61 / 8e-11 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G28090 60 / 2e-10 Heavy metal transport/detoxification superfamily protein (.1) AT3G21490 46 / 2e-06 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038785 [exp] 317 / 7e-110 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10012867 [exp] 117 / 9e-30 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10030514 [exp] 99 / 4e-24 AT5G50740 221 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10032923 [exp] 90 / 8e-21 AT5G24580 313 / 1e-106 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10015583 [exp] 89 / 2e-20 AT5G24580 314 / 6e-107 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10037044 [exp] 83 / 7e-19 AT3G02960 137 / 6e-40 Heavy metal transport/detoxification superfamily protein (.1) Lus10015762 [exp] 82 / 2e-18 AT3G02960 151 / 3e-45 Heavy metal transport/detoxification superfamily protein (.1) Lus10014421 [exp] 78 / 3e-16 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021432 [exp] 74 / 5e-15 AT5G60800 158 / 1e-46 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G006600 [exp] 202 / 1e-64 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 185 / 4e-58 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.015G099500 [exp] 131 / 2e-36 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 125 / 5e-34 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.016G017600 [exp] 108 / 5e-29 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.012G007300 [exp] 88 / 2e-20 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.015G003900 [exp] 84 / 1e-18 AT5G24580 247 / 1e-80 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.009G007600 [exp] 72 / 2e-14 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G093100 [exp] 69 / 2e-13 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G214700 [exp] 69 / 2e-13 AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10039074 pacid=23150284 polypeptide=Lus10039074 locus=Lus10039074.g ID=Lus10039074.BGIv1.0 annot-version=v1.0 ATGCATTGTGAAGCTTGTGCTAGGAAGGTTGCCAGAGCCCTCAAAGGGTTTGAAGGAGTGGAGGAAGTGAGAGCAGATAGCAAGACAAGCAAAGTGGTGG TGAAAGGGAAGACAGCAGATCCATTGAAAGTATGGGAGAGGCTACAGAAAAAGAGTGGGAGGAAAGTTGAGTTGATTTCTCCTCTGCCTAAGCCACCAGA GGACGAGAAGGAAACCAAGGTTGAAGATCAGCCAACTCCTAAAGAAGAACCCAAAGAGCCTGAGAAGAAAGATGAGCCTCCCCCAGTAGTCACAGTTGTA CTGAGCATCAGAATGCACTGTGAAGCTTGTGCTCAAGTTCTACAAAAGAGAATCAGGAAGATTCCAGGGGTGGAGACAGTGGAAACAGACATAGTAAATG GGACAGTGACAGTGAAAGGGGTGGTGGAGCCAGGGAAGCTGGCTGAAATTGTCTACAAGAAGACAAGAAAGCAGGTCTCCATAGTGAACAAAGAAGAAGA GAAGAAGGAAGAAGGGGAGGAAAAGAAGAAGGAAGAAGAGGAGGAGAAGAAGAAGAAGGAAGAAGAAGAAGAGGAGAAGAAGAAGAAGGAAGAAGGTGGT GGAGAGCAAGGGAAAACAGAGGAGTTGCTGCAGAATGAACATGAGATAAAGAGAAGTGAGTATTGGCCTTCGAGGAGTAATTACTCTGAGTTTTATACTT ACCCTCCTCCTCAGATGTTCAGTGATGAGAACCCAAATGCCTGCTCTGTTATGTGA
AA sequence Show only first row Show all	>Lus10039074 pacid=23150284 polypeptide=Lus10039074 locus=Lus10039074.g ID=Lus10039074.BGIv1.0 annot-version=v1.0 MHCEACARKVARALKGFEGVEEVRADSKTSKVVVKGKTADPLKVWERLQKKSGRKVELISPLPKPPEDEKETKVEDQPTPKEEPKEPEKKDEPPPVVTVV LSIRMHCEACAQVLQKRIRKIPGVETVETDIVNGTVTVKGVVEPGKLAEIVYKKTRKQVSIVNKEEEKKEEGEEKKKEEEEEKKKKEEEEEEKKKKEEGG GEQGKTEELLQNEHEIKRSEYWPSRSNYSEFYTYPPPQMFSDENPNACSVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50740			Heavy metal transport/detoxifi...		Lus10039074 [exp]	0	1
AT5G50740			Heavy metal transport/detoxifi...		Lus10038785 [exp]	1.0	0.9080
AT2G34450			HMG-box (high mobility group) ...		Lus10025391 [exp]	10.5	0.8040
AT5G46030			unknown protein		Lus10015293 [exp]	11.1	0.8418
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10003813 [exp]	12.8	0.8465
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	14.4	0.8466
AT5G05365			Heavy metal transport/detoxifi...		Lus10009848 [exp]	19.0	0.8402
AT2G41200			unknown protein		Lus10032687 [exp]	19.2	0.8395
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10009467 [exp]	24.0	0.8020
AT2G22795			unknown protein		Lus10007239 [exp]	25.2	0.7984
					Lus10037173 [exp]	26.0	0.8403

Compare expression of checked genes

Lus10039074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.