Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16370 1304 / 0 ATOPT3 oligopeptide transporter (.1) AT5G64410 845 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT1G09930 842 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT4G10770 825 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G27730 814 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 776 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT4G26590 776 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G53510 765 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT5G55930 761 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038784 [exp] 1478 / 0 AT4G16370 1302 / 0.0 oligopeptide transporter (.1) Lus10041897 [exp] 814 / 0 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022372 [exp] 813 / 0 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10006581 [exp] 788 / 0 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10032585 [exp] 761 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022543 [exp] 760 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 759 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 759 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 755 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G006500 [exp] 1293 / 0 AT4G16370 1305 / 0.0 oligopeptide transporter (.1) Potri.006G006000 [exp] 1286 / 0 AT4G16370 1284 / 0.0 oligopeptide transporter (.1) Potri.009G079500 [exp] 840 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.005G150400 [exp] 837 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.003G145500 [exp] 836 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.002G109300 [exp] 818 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.007G056900 [exp] 814 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 814 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 798 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.001G369700 [exp] 761 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10039075 pacid=23150708 polypeptide=Lus10039075 locus=Lus10039075.g ID=Lus10039075.BGIv1.0 annot-version=v1.0 ATGCCGACCAAACCCGAACCTGGAACCCAACCCACAACCCAACCCCAACTCCCGAAACAATCCGACCCGGATTCGGAGCCCCACGAACGATGCCCGGTGG AGGAAGTCGCCCTGGTGGTGCCGGAAACCGACGACCCAACTCTCCCGGTGATGACATTCCGGGCATGGTCTCTGGGTTTAATCTGCTGCACTCTCCTCAT CTTCCTCAACACTTTCTTCACTTACAGGACCCAACCCCTCGTCATCTCCGCCATCCTCATGCAGATTGCCGTCCTGCCCATCGGCAAATTCATGGCCAGA GCTCTCCCCACCAGGGAGTTCAATTTCTTCGGGTTTTGGAAGTTCAGCCTCAATCCTGGCCCGTTTAACATGAAGGAGCATGTTATCATCACCGTGTTTG CAAATTGTGGGGTTTCCATGGGTGGCGGCGACGCTTACTCCATTGGCGCCATTACTGTCATGAAGGCTTACTATAAACAGAGCCTCAGCTTCCTCTGCGC TCTCTTCATCGTCTTGACCACCCAGGTGTTGGGGTATGGATGGGCTGGGATGCTGAGGAGGTATTTGGTGGATCCAGTTGAGATGTGGTGGCCTTCGAAT CTTGCACAGGTCTCACTCTTCAGAGCTCTTCATGAGAAGGAGGTGAAGAACAAAGGCCCCACTCGAATGCAGTTCTTCCTTATAGCCTTGACAATAAGCT TCCTCTACTATGCACTTCCAGGCTACTTGTTTCCAATCCTGACATTCTTCTCCTGGGTTTGTTGGGCATGGCCTAACAGCATCACGGCTCAACAGATAGG TTCGGGATACCATGGTCTCGGCTTAGGTGCTTTCACCCTCGATTGGGCCGGTATCACTGCTTACCATGGAAGCCCTCTTGTGACACCGTGGACTTCCATT GTCAATGTTGGTGTTGGCTTCATCATGTTCATCTACATCGTTGTACCAGTCTGTTACTGGAAGTTCAACACTTTCGATGCTCGGAAATTCCCCATTTTCT CGAACCAGCTGTTTACTACCACCGGTTCGAAGTACGATACGACCAAGATCTTGACCCCGAATTTCGATCTCAATGTTGATGCATACAACAGCTATGGAAA GCTTTACTTGAGCCCTCTCTTTGCGCTGTCGATTGGATCGGGGTTCGCGAGGTTCACTGCTACCATAGTTCATGTGGCCCTCTTCCATGGGAGCGATATA TGGAGGCAGAGTCGATCGGCGATGAAGAATAACATGAAGCTGGATGTTCATGCTAAACTGATGAAAGCTTACAAACAAGTGCCGGAATGGTGGTTCATGA TTCTGCTGGTTGGAAGCATTGTTCTGTCTCTAATGATGTCTTTCATTTGGAAAGCTGATGTTCAACTTCCATGGTGGGGAATGCTCTTTGCTTTTGCCTT GGCCTGGATAGTTACCCTTCCCATTGGTGTCATTCAAGCAACAACAAACCAGCAACCAGGATATGACATCATAGCTCAGTTCATGATCGGCTATGTCCTC CCTGGGAAGCCAATAGCTAACTTGTTGTTCAAGATATACGGAAGAATCAGTACGGTCCATGCTCTCTCTTTCTTGTCCGACCTTAAACTCGGTCACTACA TGAAGATCCCTCCAAGGTGCATGTACACAGCTCAGCTAGTGGGAACATTGGTCGCTGGCACTGTAAACCTTGCAGTAGCATGGTGGATGCTGGAAAGCAT AACCGACATTTGCGACATCGAAGGAACACATCCGGACAGTCCCTGGACATGTCCCAAGTACCGTGTCACATTTGACGCATCTGTCATCTGGGGATTGATC GGACCAAGACGCCTGTTTGGCCCCGGAGGGTTGTACCGAAACTTGGTTTGGTTGTTCCTAATCGGAGCTATCCTGCCGGTACCAATCTGGGTACTAAGCA AAGTATACCCAGACAAGAAATGGATTGCACTGATCAACATACCTGTCATATCCTATGGTTTCGCTGGAATGCCGCCTGCAACTCCAACGAACATCGCGAG CTGGCTCATCACCGGAATGATCTTCAACTACTTCGTGTTCAAGTACCACAAACGTTGGTGGCAGAAGTACAACTATGTCCTTTCGGCAGCACTTGATGCA GGGACGGCTTTCATGGGTGTGCTGCTGTTCTTCGCCCTGCAGAATTCGGGTCACAATTTGAAATGGTGGGGAACAAAGCTTGATCACTGCCCTCTGGCTA CTTGCCCTACGCTACCGGGGATCGCAGTCAAAGGATGCCCTGTTCCCAAGTGA
AA sequence Show only first row Show all	>Lus10039075 pacid=23150708 polypeptide=Lus10039075 locus=Lus10039075.g ID=Lus10039075.BGIv1.0 annot-version=v1.0 MPTKPEPGTQPTTQPQLPKQSDPDSEPHERCPVEEVALVVPETDDPTLPVMTFRAWSLGLICCTLLIFLNTFFTYRTQPLVISAILMQIAVLPIGKFMAR ALPTREFNFFGFWKFSLNPGPFNMKEHVIITVFANCGVSMGGGDAYSIGAITVMKAYYKQSLSFLCALFIVLTTQVLGYGWAGMLRRYLVDPVEMWWPSN LAQVSLFRALHEKEVKNKGPTRMQFFLIALTISFLYYALPGYLFPILTFFSWVCWAWPNSITAQQIGSGYHGLGLGAFTLDWAGITAYHGSPLVTPWTSI VNVGVGFIMFIYIVVPVCYWKFNTFDARKFPIFSNQLFTTTGSKYDTTKILTPNFDLNVDAYNSYGKLYLSPLFALSIGSGFARFTATIVHVALFHGSDI WRQSRSAMKNNMKLDVHAKLMKAYKQVPEWWFMILLVGSIVLSLMMSFIWKADVQLPWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVL PGKPIANLLFKIYGRISTVHALSFLSDLKLGHYMKIPPRCMYTAQLVGTLVAGTVNLAVAWWMLESITDICDIEGTHPDSPWTCPKYRVTFDASVIWGLI GPRRLFGPGGLYRNLVWLFLIGAILPVPIWVLSKVYPDKKWIALINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFKYHKRWWQKYNYVLSAALDA GTAFMGVLLFFALQNSGHNLKWWGTKLDHCPLATCPTLPGIAVKGCPVPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10039075 [exp]	0	1
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10029616 [exp]	1.0	0.9443
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10037164 [exp]	2.0	0.8857
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	3.5	0.8779
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	6.3	0.8768
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	6.7	0.8635
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	7.3	0.8508
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10036763 [exp]	10.0	0.8159
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042744 [exp]	11.8	0.8331
AT1G17820			Putative integral membrane pro...		Lus10040647 [exp]	14.1	0.8447
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10008646 [exp]	15.5	0.8430

Compare expression of checked genes

Lus10039075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.