Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16360 366 / 2e-128 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT5G21170 223 / 9e-72 AKINBETA1 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) AT2G28060 87 / 2e-21 5'-AMP-activated protein kinase beta-2 subunit protein (.1) AT1G09020 57 / 5e-09 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT3G01510 48 / 6e-06 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038783 [exp] 495 / 2e-178 AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10037424 [exp] 232 / 3e-75 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10041287 [exp] 223 / 4e-71 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10006390 [exp] 202 / 2e-63 AT4G16360 222 / 3e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10012343 [exp] 194 / 2e-61 AT4G16360 220 / 1e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10003355 [exp] 104 / 6e-28 AT2G28060 150 / 2e-48 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10008427 [exp] 104 / 1e-27 AT2G28060 157 / 6e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10004490 [exp] 61 / 5e-10 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 60 / 9e-10 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G006400 [exp] 402 / 5e-142 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.006G005800 [exp] 395 / 2e-139 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.001G220800 [exp] 234 / 4e-76 AT5G21170 316 / 1e-108 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.009G021600 [exp] 231 / 9e-75 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.014G167400 [exp] 229 / 7e-74 AT4G16360 206 / 2e-65 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.009G008700 [exp] 100 / 6e-26 AT2G28060 158 / 2e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.004G213600 [exp] 96 / 2e-24 AT2G28060 156 / 8e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.010G023500 [exp] 55 / 3e-08 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.008G216800 [exp] 50 / 9e-07 AT1G09020 628 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 47 / 9e-06 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04739 [flax] [poplar] AMPKBI 5'-AMP-activated protein kinase beta subunit, interaction domain
Representative CDS sequence Show only first row Show all	>Lus10039076 pacid=23150509 polypeptide=Lus10039076 locus=Lus10039076.g ID=Lus10039076.BGIv1.0 annot-version=v1.0 ATGGGGAATGTGAACGGAAGAGAGGAGGATGGGGAAGGAGGAGTAGGCGGAGGAGGAGAGGACGAAGAAGTGAGAAACGGCGTCGTACTAGGCGGCGGTT CTGTTGACGAGCAAAGACGGCGAAGTGGGGTCATGGTTGTTCCTCATGGCGGCGGTGGCGGCGTCGTTTACCGGCCTCCGCACCCGGAGTTGATGAGTCA CTCTCCTCCTCACAGTCCTAGAGCCAGTCACTCCCCTCTCATGTTCACTCCACAGGTTCCAGTGGTGCCATTGCCAAGGCCTGATGAGGTTCAAATACCG AGCGATTCGTGGATGCAAAGCTCCGGTGGTCACGAGGAAACGCTCCAGGAGCAAGGGATTCCGACGATGATAACGTGGAGCTACGGTGGTAAGGGTGTAG CAGTGGAAGGATCTTGGGATGATTGGAAAGCAAGAATTCCACTGCAGAAAGCTGGTAAGGACTTCACCATCATGAAGGTGCTGCCTTCAGGTGTTTACCA ATACCGGTTTATCGTTGATGGGCAGTGGAGACATATCCCTGACTTGCCCTGCACCCAAGATGATGCTGGAAATACCTACAACGTTTTGGATTTGCAGGAT TACGTTCCAGAAGACCTAGAGAGCATATCAAGCTTCGAACCCCCTCAATCTCCCGAGGCAAGCTACACGAATCTGCAACTGGGAAACGAGGATTTCGCAA AGGAACCACCTTTCGTCCCTCCGCATTTACAGATGACATTGCTTAACTTGCCATCATCGTACATGGAGATTCCACCTCCTCTGTCGAGACCTCCGCACGT GGTACTCAATCACCTCTACATGCAAAAGGGGAAGAGTAGTCCTGCAGTCGTTGCACTCGGTTCAACACATCGGTTCTCGGCCAAGTATGTGACTGTTGTG CTATATAAATCCTTGCAGAGGTAA
AA sequence Show only first row Show all	>Lus10039076 pacid=23150509 polypeptide=Lus10039076 locus=Lus10039076.g ID=Lus10039076.BGIv1.0 annot-version=v1.0 MGNVNGREEDGEGGVGGGGEDEEVRNGVVLGGGSVDEQRRRSGVMVVPHGGGGGVVYRPPHPELMSHSPPHSPRASHSPLMFTPQVPVVPLPRPDEVQIP SDSWMQSSGGHEETLQEQGIPTMITWSYGGKGVAVEGSWDDWKARIPLQKAGKDFTIMKVLPSGVYQYRFIVDGQWRHIPDLPCTQDDAGNTYNVLDLQD YVPEDLESISSFEPPQSPEASYTNLQLGNEDFAKEPPFVPPHLQMTLLNLPSSYMEIPPPLSRPPHVVLNHLYMQKGKSSPAVVALGSTHRFSAKYVTVV LYKSLQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16360			5'-AMP-activated protein kinas...		Lus10039076 [exp]	0	1
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	11.4	0.9184
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040663 [exp]	15.6	0.9165
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Lus10003029 [exp]	16.4	0.8901
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10032530 [exp]	17.1	0.9163
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	17.6	0.9112
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	28.8	0.9137
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	29.7	0.9038
					Lus10043486 [exp]	32.3	0.9073
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	32.5	0.9018
AT1G22030			unknown protein		Lus10019943 [exp]	37.2	0.9071

Compare expression of checked genes

Lus10039076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.