Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47680 300 / 1e-99 AtTRM, TRM10 tRNA modification 10, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038778 [exp] 509 / 0 AT5G47680 371 / 1e-128 tRNA modification 10, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G005500 [exp] 351 / 7e-120 AT5G47680 329 / 5e-112 tRNA modification 10, unknown protein Potri.006G004900 [exp] 350 / 1e-119 AT5G47680 312 / 1e-105 tRNA modification 10, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF01746 [flax] [poplar] tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10039081 pacid=23150729 polypeptide=Lus10039081 locus=Lus10039081.g ID=Lus10039081.BGIv1.0 annot-version=v1.0 ATGATGACCGAAAATGCCACAGAGATTCTCCAAAGCTCCACCGACGGTACGGAAAACGACCAGGCACCGCCTATTCCTCCTACCACCACGCTCTCCAAGA ACGCTCAGAAGAAGCTGTTGAAGCAGCAGAAGTTCGAGGCGAAGAAAGCCGAGAAGAAAGCTTTCGCCAAGGAGCAGAAGAAGAAGGAAGGCGAGCGGAA GCGGAAGGAATGGGAGGAGAAGCTGGCCTCCATTCCGGATGAAGAGAGGTTGAAGGTGATCGAATCTAGGAAAGCTTTGAGGAAGGAGAGAATGGAGTCG CGATCGGAGGAGAGGAATAAGAAGCTTGAGCGGCTTAGCAAAGCGAGAGAGCAAGGTCAGAACATCGTCATCGATCTTGAATTCGCAGACCTTATGACCG TCCCTGAGATTCACAGCCTTGTTCAACAGATAATGTACTGTTACGCAGAGAACGGGAGATGCAAAACCCCGGGGCACCTATGGCTGACAGGGTGCCAAGG GGATATGGAAAACCAATTGAAGACACTTCCCGGGTTTGACAAGTGGATCATAGAGAAGGAGAGTCAATCATACATCGAAGCATTCAAATACGAGAAGGAG AAGTTGGTGTACCTCACAGCGGACTCCGAAACCGTGTTAGACGAACTCGATGTTAGCAAAACATACATTGTTGGTGGGTTGGTGGACAGGAATCGGTTTA AAGGGATAACCTTGAAGAAAGCAGAGGAGCAAGGAATCCAGACTGCAAAACTTCCCATAGGCAACTTCTTGAAGATGTCTAGTTCTCAGGTGCTAACTGT AAACCAAGTCATGGAAATCCTGCTCAAGTTCTTGGAAACTAGAGACTGGAAGGAGTCATTTTTCCATGTGATTCCGCAGAGGAAAAGATGCGAAACAGAT GCACCAGCAGGTGATCGAGAAACAGAAGAGGGAGAGGGAGTTGATCAGGCATCAGAGAGTAAGAGAAAGTGTGTCGAGAAGAATGGCGGCGGAAGGTGCA GTGTGGGGCGGCAGTTCGACGTTGGCGCTGGTGGCGGTGGCGGCGATGGTGATGTTGGCTCCGCTGGCGATTGGTTCGTTGGCTCCGCCGTCTTGGTTTG TGATAGTGGCCATGATTGTCTTCCTCTTCGTCGTGCTCGTGTCTCTCCACCTCAAGGCCTCGGCACCATGATGATTTATGAATGA
AA sequence Show only first row Show all	>Lus10039081 pacid=23150729 polypeptide=Lus10039081 locus=Lus10039081.g ID=Lus10039081.BGIv1.0 annot-version=v1.0 MMTENATEILQSSTDGTENDQAPPIPPTTTLSKNAQKKLLKQQKFEAKKAEKKAFAKEQKKKEGERKRKEWEEKLASIPDEERLKVIESRKALRKERMES RSEERNKKLERLSKAREQGQNIVIDLEFADLMTVPEIHSLVQQIMYCYAENGRCKTPGHLWLTGCQGDMENQLKTLPGFDKWIIEKESQSYIEAFKYEKE KLVYLTADSETVLDELDVSKTYIVGGLVDRNRFKGITLKKAEEQGIQTAKLPIGNFLKMSSSQVLTVNQVMEILLKFLETRDWKESFFHVIPQRKRCETD APAGDRETEEGEGVDQASESKRKCVEKNGGGRCSVGRQFDVGAGGGGGDGDVGSAGDWFVGSAVLVCDSGHDCLPLRRARVSPPQGLGTMMIYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10039081 [exp]	0	1
AT2G37020			Translin family protein (.1.2)		Lus10029829 [exp]	1.0	0.9113
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10017214 [exp]	2.0	0.9089
AT5G27120			NOP56-like pre RNA processing ...		Lus10001716 [exp]	3.0	0.9057
AT1G15870			Mitochondrial glycoprotein fam...		Lus10026060 [exp]	3.7	0.8593
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10008853 [exp]	4.5	0.8810
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	10.2	0.8643
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	11.2	0.8618
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Lus10004871 [exp]	14.0	0.8435
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	20.1	0.8436
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035632 [exp]	20.2	0.8588

Compare expression of checked genes

Lus10039081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.