Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47690 1438 / 0 binding (.1.2.3) AT1G77600 454 / 2e-134 ARM repeat superfamily protein (.1.2.3) AT1G15940 167 / 1e-41 Tudor/PWWP/MBT superfamily protein (.1) AT4G31880 162 / 4e-40 unknown protein AT1G80810 154 / 5e-38 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G10950 84 / 2e-16 Tudor/PWWP/MBT superfamily protein (.1) AT4G02070 62 / 5e-09 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT2G44440 54 / 5e-07 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT1G05830 54 / 2e-06 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT4G32620 50 / 1e-05 Enhancer of polycomb-like transcription factor protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038777 [exp] 2701 / 0 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10025655 [exp] 429 / 1e-125 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10018180 [exp] 417 / 3e-122 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10017121 [exp] 175 / 5e-44 AT4G31880 473 / 2e-152 unknown protein Lus10018332 [exp] 173 / 2e-43 AT4G31880 464 / 2e-149 unknown protein Lus10002307 [exp] 108 / 3e-24 AT4G31880 214 / 4e-61 unknown protein Lus10026078 [exp] 101 / 4e-22 AT4G31880 228 / 1e-66 unknown protein Lus10010010 [exp] 64 / 1e-09 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10041252 [exp] 57 / 1e-07 AT4G32620 923 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G005400 [exp] 1746 / 0 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 1728 / 0 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.002G084300 [exp] 540 / 1e-165 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.006G263300 [exp] 177 / 2e-44 AT4G31880 424 / 8e-133 unknown protein Potri.018G020400 [exp] 175 / 4e-44 AT4G31880 389 / 3e-120 unknown protein Potri.001G046500 [exp] 155 / 7e-38 AT4G31880 267 / 1e-76 unknown protein Potri.003G181300 [exp] 134 / 3e-31 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.018G109600 [exp] 133 / 3e-31 AT4G31880 180 / 3e-47 unknown protein Potri.006G186700 [exp] 131 / 2e-30 AT4G31880 167 / 8e-43 unknown protein Potri.014G121701 [exp] 60 / 2e-08 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039082 pacid=23150606 polypeptide=Lus10039082 locus=Lus10039082.g ID=Lus10039082.BGIv1.0 annot-version=v1.0 ATGGCGGACAAGCTCGAGGGGCACCTTAAGGAAGTAGGATCCAAGCTAGACACTCCTCCTTCTTCCAAGGATGCTCTGCTTAAGCTTTTGAAGCAAGCTG CTTCATGTCTCTCTGATATGGATCAATCGCCATCCCCGTCAATGTCAAAGTCCATGCAACCATTATTAACTGCAATTGTTAAGCCAGAATTGCTGCAGCA TCAGGATAAGGACGTGAAGCTTCTAGTCGCAACCTGCATCTGTGAAATCACCCGGATTACTGCACCTGAAGCTCCTTACAGTGATGAAATTCTGAAGGTG GATATATTTCAGTTGATTGTAAGCACCTTCAGTGGCTTAAGTGATACAACTGCGGGTCCATCTTTTGGTAGGAGAGCTCTCATTTTGGAGACTGTTGCCA AATACCGGTCCTGTGTCGTGATGTTGGATCTTGAATGTGACGATCTCATTAAAAAGATGTTCAGTACATTTTTTTCTGTCACCAGGGATGACCATCAAGA AAATGTACTTACGTCCATGCAAACCATCATGGTCGTTTTGATAGATGAAAGTGAAGAAGTTAATGATGATCTTTTACTTGTAATATTATCTGCTTTAGGC CGTAATAAAAGTGATGTTTCTAAGGCTGCAAGGAAGCTTGCTATGAATATCATAGAACAGTGTGCAGTTCAGCTTGAAGCTGGCATCAAACGGATCCTTG TTTCGTTAATGTCTGGAGATAACAGGTTGTCAGATTCTCAGATTGACTACCATGAAGTTATCTATGATATCTATTGTTGTGCTCCTCAGATATTGTCTGG AGTGGTACCATACCTCACTGGAGAGTTGTTGACCGATCAGCTGGACACTCGTTTGAAAGCAGTAGGATTAGTTGGAGAACTTTTTTCTTTACCGGGATCC ACAATCATCGAGACATTTCGGCCAATCTTTCTGGAATTCCTGAAAAGGTTGACGGACAGGGTAGTTGAAGTTAGAATGTCTGTTCTTGAGCATGTAAAGT GCTGTTTATTGTCAAATCCTATTCGCACTGAGGCTTCTGAAATGATAGCTGCGCTATGTGAGCGATTGTTAGACTTTGATGAGAACATTAGGAGGCAGGT CGTTGAGGTGCTCAGCAATATTGCTATTCATGCCCCTGGTTCTGTTCCTGCTGAAACTATAAAGCTGGTCTCCGATCGTCTAAGAGACAAATCCCTTACG GTTAAAAAATGTACCATGGAGAGGATAGCTGAGATCTTCAGGGCTTATTGCAAGAAATCTTCAGATTCCTCCATCATTTCCCATGAATACGAATGGGTTC CTGGGAAGATTTTGAGATGCTTTTACGATAAAGATTTCAGGTCAGATGCAATAGAGTATATACTCTCTGTTTCTTTATTCCCAAGCGATCTCTTGGTAAA GGATAGAGTTACGCTTTGGGTCAGAATCTTCGCTACCTTTGACAAAATTGAACTGAAAGCTCTCGAGAAATTGCTGGAGCAAAAGCTAAGGTTACAACAA GAGATGCAGAGGTACATGTCTCTTAGGTCAATGCATCAGGAGGGTGACGCACCAGAGATCCAAAAGAAGATTCTATTCTGCTTTCGGGTTATGTCTCGTT CCTTCGCTGATCCTGCTAAGGCTGAGGAGAATTTTCTGATACTTGATCAACTGAAAGATACAAACGTCTGGAAACTTTTAGCTAGTCTGCTTGATGTAAA TACTAGCTTGCAACAAGCTTGCACTAATCGGGACGAATTGCTCAAAATACTTGGTGAGAAACACGGGCTTTATGATTTTCTCAGCAGCCTGTCTGTCAAG TGTTCGTATCTACTTTTCAGTAAGGAGTATGTTAAAGAATTTTTTTCGGAGGCTGTATCACATAAGTCTTCTGGGAATTCAGCATTGATTCAATCATCAA TGAGTATATTGGTGACTCTTGCACGTTTTGGGCCATTGCTATTTGGGGGTGCTGAAGAAGAATTGATTAGCCTTTTAAAGGATGATAGTGAAATAATCAA AGAAGGTGCATTACACGTTTTGGCTAAGGCCGGTGGCACTATCAGAGAGCAACTTGCAGTGTCCTCAAGTTCCATTGACCTCATATTGGAAAGGTTGTGC CTAGAAGGTAGTCGAAGGCAGGCAAAATATGCTGTGCTTGCACTTGCAGCAATTACAAAGGATGATGGGCTCAAGTCTCTCTCTGTTCTATACAAGAAGC TTGTTGGCATGCTGGAAGAGAAGAGAAATTTGCCTGCTGTTCTCCAGTCTCTGGGATGCATTGCACAAACTGCTATGTCAGTTTTTGAAACTAGAGAGAC TGAAATTCAAGAATTTGTGAAAGACGGAATTCTGAATTGCAAGAGTCAGCCAGAAGATGATGCAAAAGTTTGTTGGGGCGATGTTAGTGAAACTAGTTTG TTGAAGATATATGGGCTTAAGGTGTTTGTCAAAAGCCACTTACCTATTAAAGATGTGCACCTCCGTCCTGGTATTGGTGACCTTCTAGATATCCTGAAGA ACCTACTGAAAGATGAAACATTACAGGGTACAGAATCAAGTTTGGTTGATAAAGCACATCTGAGGCTTGCTGCTGCGAAAGCAGTTCTTCGTCTGTCAAA GCACTGGGATCATAAGATACCTGTTGATGTATTCCACTTGACTTTGAGAGTGGCTGAGAGTGCTTTCCCTGAAGCTAGGAAGATCTTTCTTGGCAAAGTT CATCAGTATATAAAGGATCGCCTTCTTGACCCCAAGTATGCTTGTGCATTCTTGTTCTATCCGATAGAATCAGATCAGCTTGGTTTTGAGGAGGAAAAGC AGAATCTCGTTGATATTATTCAAATGCATTGCCAGTCAAAGGCACGCCAAGTGTCTTTACAAAGTGATGCAAGTCCCTTAACAGCTTTTCCTGAATCGAT TCTGCCATACGCGGTCCATTCACTGGCACATATCTCATGTCCTGACATAGACGAGTGTAAAGATGTTAAAGCATATGAGCCAATATATCGGCGACTATAC TTGTTTCTTTCTTTGTTGATGCACAAAGAGGAAGAAGTAAAGTCAGAGGCTGACACCAATGCCAAAGATAGCATTTCTGTGATGACGTCTGTGTTTCAGG CTATCAAGGACTCAGAAGATATCATGGATATGACAAAGTCTAAGAAGTCACGGGCTCTGTCTGAACTTGGATTGTCAATCGTCAAGCGCTTAGTTCCAAA GGAGGATGACTTACAGATGTTGGCTTTACCAGTTACCCTGCCTTCCATGTTGTACAAGCTATATGAAAAGAAAGAAGAACAATCTCTGACAAATGAAGAG AAGACATGGCTTGCGGAGGACAGTGTAATGACACATTTTCAGTCACTAAATTTTGAAACCGATGTAACACAAAAGGATCCTGCACCCGCTGCTGAGGAGG AAGTTCGAAAAAATAGTGACAAAGAAGAGGATGATGCGCCTCTTGGTGAGATGGTAAAACAGTTGAAGGCCAAGGCAACAAAATCCGGAAGGAATAGAAG GAATAAGAAAAAGAAATCTTCATCAGCTAAAGGCAAAAGCACGGAAAATGATTTTGATATTTTGAAGATGGTAAGGGAAATGGACGTGGATGATGTGGTA GTTTCCGGTAAGCTTGAGTCAAGCAATGGTCATAAAGATGCTCCAAGTCAGAACCCGAAATCAGAACTGGAACACCAAAAGGCGGAGAAAAGAAAATCAA TTGATGTAGCGTCTGTCCCGGTACCTAAGCGTCGGAGATCATCAACCATTCATACTGCTGCTAGATTGTCCCAGAGTCCAATGAAAGCTCTTTCAAGAGC TTCAGCAGAAGATTCAAATCCTGATTTTAAAAACAAAGGCTCATTTCCAAAGAAGATGGGTAGAAGTGGTGACTCCGATTTTTTGGTATCATGTGTTAGA AAGAGTAGAAATTCTTTACCAACGAAGGAATTCAAGATTTTTGATTTCGATGGTGATGATAGCGAGAATGACGCTAAACATTCCGATGAAGAAAATTGGA CGAGCCCCAGTCTTCGCAGAAAGAACGACAAGAACAATGGAAAACATGTCGCAAAGCCTTCTACAGAATCTGCTTCGAAGAGGAAAAGAAAAAGTGTTTC AGGAGGCCAAAAGCTCGCAAAGAACGATGGTGGAATAGATCTGGAAGCATTGATTGGTAATAGAATAAAGGTCTGGTGGCCAATGGACAAGGAGTTTTAT GCTGGAACAATCAAGTCTTATGACCCTTTAAAGGGAAAGCATGTGATCTTATATGATGATGGAGATATAGAAGTTCTTCGTTTGGATAGAGAGCGTTGGG AACTGGTTGACAAGAGTCAGAAGAATATGAAGAAGCTCAATTCGTCTAAGCGTGCTCCTTCTAAGGATGGGTCTGCCACACCGAAGAAAAGGAGTAAAGG TGGTTCACAACAGAATAAGAGCTCCACCAAAAAAGCTAAAGCTAAAAGAACAAAGAAGAAAGCCTCAAAGCGAGTCCTGAAAGAGCCAGAAGATGATGAG CCTTCTGACGGATCTGTTCCAGAACTTGCTGTTCCATCTTATGGAGAAGAAACAAAATCAGATGACTCTCAAGTTGAACGTGAGGAAGAAACCAAGACTC TGAAGAAGGATGTAGAATCTGACAAGGAAGATACGTCAACTTCTGGAGGCAAACACTTGGAGGATGAAGCAGATAAGAAAAACTCCGATCATTCGGAGGA TGATGATGGAGAAGGAGAACCAAGTTCTAAAGCAAAAGATTCTGACAACGAAAGTGAGAAACAAGAATCGGAGAAGAGTGGTGCTGCTGATGAGGGATCT CATTCAGAAGAAAAGAAGGCAGAACAATCAGAAGATGAAGGCACATTAGAGGAAGCTGGTGATGGAGATGAATCAGGTTCAGAGGATAATGAAGATGCAG ATGACGCCGAGGAGGATGAAAACGGTGCAAGTCCGGTTGCTATGGATGTGGATGATGAAATCCCAGACGATGAGCCTCTTAGCAAATGGAAGGGTAAATT CGGGAAGAAGGCAGCATCAAAACGAGCAAAATGA
AA sequence Show only first row Show all	>Lus10039082 pacid=23150606 polypeptide=Lus10039082 locus=Lus10039082.g ID=Lus10039082.BGIv1.0 annot-version=v1.0 MADKLEGHLKEVGSKLDTPPSSKDALLKLLKQAASCLSDMDQSPSPSMSKSMQPLLTAIVKPELLQHQDKDVKLLVATCICEITRITAPEAPYSDEILKV DIFQLIVSTFSGLSDTTAGPSFGRRALILETVAKYRSCVVMLDLECDDLIKKMFSTFFSVTRDDHQENVLTSMQTIMVVLIDESEEVNDDLLLVILSALG RNKSDVSKAARKLAMNIIEQCAVQLEAGIKRILVSLMSGDNRLSDSQIDYHEVIYDIYCCAPQILSGVVPYLTGELLTDQLDTRLKAVGLVGELFSLPGS TIIETFRPIFLEFLKRLTDRVVEVRMSVLEHVKCCLLSNPIRTEASEMIAALCERLLDFDENIRRQVVEVLSNIAIHAPGSVPAETIKLVSDRLRDKSLT VKKCTMERIAEIFRAYCKKSSDSSIISHEYEWVPGKILRCFYDKDFRSDAIEYILSVSLFPSDLLVKDRVTLWVRIFATFDKIELKALEKLLEQKLRLQQ EMQRYMSLRSMHQEGDAPEIQKKILFCFRVMSRSFADPAKAEENFLILDQLKDTNVWKLLASLLDVNTSLQQACTNRDELLKILGEKHGLYDFLSSLSVK CSYLLFSKEYVKEFFSEAVSHKSSGNSALIQSSMSILVTLARFGPLLFGGAEEELISLLKDDSEIIKEGALHVLAKAGGTIREQLAVSSSSIDLILERLC LEGSRRQAKYAVLALAAITKDDGLKSLSVLYKKLVGMLEEKRNLPAVLQSLGCIAQTAMSVFETRETEIQEFVKDGILNCKSQPEDDAKVCWGDVSETSL LKIYGLKVFVKSHLPIKDVHLRPGIGDLLDILKNLLKDETLQGTESSLVDKAHLRLAAAKAVLRLSKHWDHKIPVDVFHLTLRVAESAFPEARKIFLGKV HQYIKDRLLDPKYACAFLFYPIESDQLGFEEEKQNLVDIIQMHCQSKARQVSLQSDASPLTAFPESILPYAVHSLAHISCPDIDECKDVKAYEPIYRRLY LFLSLLMHKEEEVKSEADTNAKDSISVMTSVFQAIKDSEDIMDMTKSKKSRALSELGLSIVKRLVPKEDDLQMLALPVTLPSMLYKLYEKKEEQSLTNEE KTWLAEDSVMTHFQSLNFETDVTQKDPAPAAEEEVRKNSDKEEDDAPLGEMVKQLKAKATKSGRNRRNKKKKSSSAKGKSTENDFDILKMVREMDVDDVV VSGKLESSNGHKDAPSQNPKSELEHQKAEKRKSIDVASVPVPKRRRSSTIHTAARLSQSPMKALSRASAEDSNPDFKNKGSFPKKMGRSGDSDFLVSCVR KSRNSLPTKEFKIFDFDGDDSENDAKHSDEENWTSPSLRRKNDKNNGKHVAKPSTESASKRKRKSVSGGQKLAKNDGGIDLEALIGNRIKVWWPMDKEFY AGTIKSYDPLKGKHVILYDDGDIEVLRLDRERWELVDKSQKNMKKLNSSKRAPSKDGSATPKKRSKGGSQQNKSSTKKAKAKRTKKKASKRVLKEPEDDE PSDGSVPELAVPSYGEETKSDDSQVEREEETKTLKKDVESDKEDTSTSGGKHLEDEADKKNSDHSEDDDGEGEPSSKAKDSDNESEKQESEKSGAADEGS HSEEKKAEQSEDEGTLEEAGDGDESGSEDNEDADDAEEDENGASPVAMDVDDEIPDDEPLSKWKGKFGKKAASKRAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	0	1
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	1.7	0.9471
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10002459 [exp]	2.0	0.9403
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	4.5	0.9341
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031042 [exp]	5.5	0.9331
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	5.7	0.9436
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	6.3	0.9153
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	10.4	0.9417
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	11.0	0.9274
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	12.2	0.9122
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	12.5	0.9256

Compare expression of checked genes

Lus10039082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.