Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74050 306 / 2e-106 Ribosomal protein L6 family protein (.1) AT1G74060 302 / 9e-105 Ribosomal protein L6 family protein (.1) AT1G18540 294 / 2e-101 Ribosomal protein L6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038775 [exp] 340 / 7e-120 AT1G74050 359 / 2e-127 Ribosomal protein L6 family protein (.1) Lus10039083 [exp] 338 / 8e-119 AT1G74050 363 / 1e-128 Ribosomal protein L6 family protein (.1) Lus10038776 [exp] 335 / 1e-117 AT1G74050 355 / 2e-125 Ribosomal protein L6 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065800 [exp] 318 / 5e-111 AT1G74050 304 / 2e-105 Ribosomal protein L6 family protein (.1) Potri.001G271500 [exp] 311 / 4e-108 AT1G74050 288 / 5e-99 Ribosomal protein L6 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01159 [flax] [poplar] Ribosomal_L6e Ribosomal protein L6e PF03868 [flax] [poplar] Ribosomal_L6e_N Ribosomal protein L6, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039084 pacid=23150276 polypeptide=Lus10039084 locus=Lus10039084.g ID=Lus10039084.BGIv1.0 annot-version=v1.0 ATGGCGCCAAGGAAGACTCCAAAGGTTAGCAGGAACCCCGACCTGATTAGGGGTGTGGGTAAATACTCCAGATCTCAAATGTACCACAAGCGTGGTTTGT GGGCAATCAAGGCTAAAAATGGCGGTGTTTTCCCCAAGCACGATCCTAAGCCTAAGGTCGCCGCCCCTGCAGAGAAGGCCTCCAAGTTCTACCCTGCTGA CGATGTTAAAGTTCCTCTCCCCAACAGGCGCAAGCCCAAACCGACCAAGCTCAGGGCTAGCATCACCCCAGGAACTGTTTTGATCCTCCTTGCTGGAAGG TTCAAAGGAAAGAGAGTTGTGTTCCTCAAGCAGCTTCCTTCTGGCTTGCTTTTGGTCACTGGGCCATTCAAGATCAATGGTGTTCCTCTGAGACGGGTGA ACCAAGCATATGCCATCGGAACTTCCCTAAAGGTTGACATTTCCGGTGCTAACGTGGACAAGTTTGATGATAAATACTTTGCTAAGGCTGCCGAAAAGAA GAAGAAGAAGAGCGAGGGAGAGTTCTTCGAGGAAGACAAGGAGGAGAAGAGTGAGCTTCCCCAGGACAAGAAGGATGACCAGAAGTCGGTTGATGCTGCT TTGCTCAAGACAATTGAGGCTGTGCCAGATTTGAAGTCCTACTTGGGCGCAAGGTTCTCTTTGAAGGCAGGCATGAAGCCCCATGAGCTTCTGTTTTAA
AA sequence Show only first row Show all	>Lus10039084 pacid=23150276 polypeptide=Lus10039084 locus=Lus10039084.g ID=Lus10039084.BGIv1.0 annot-version=v1.0 MAPRKTPKVSRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPKHDPKPKVAAPAEKASKFYPADDVKVPLPNRRKPKPTKLRASITPGTVLILLAGR FKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYAIGTSLKVDISGANVDKFDDKYFAKAAEKKKKKSEGEFFEEDKEEKSELPQDKKDDQKSVDAA LLKTIEAVPDLKSYLGARFSLKAGMKPHELLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	0	1
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10015588 [exp]	1.4	0.9816
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10005286 [exp]	1.4	0.9840
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10012463 [exp]	1.7	0.9796
AT5G48760			Ribosomal protein L13 family p...		Lus10032599 [exp]	2.8	0.9790
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	3.2	0.9788
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10031124 [exp]	3.7	0.9765
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	4.7	0.9720
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	5.5	0.9728
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	5.5	0.9786
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	6.0	0.9748

Compare expression of checked genes

Lus10039084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.