Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59810 826 / 0 ATSBT5.4 Subtilase family protein (.1) AT2G04160 799 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 580 / 0 ARA12 Subtilase family protein (.1) AT4G34980 553 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT5G45650 550 / 0 subtilase family protein (.1) AT2G05920 526 / 8e-177 Subtilase family protein (.1) AT3G14067 525 / 5e-176 Subtilase family protein (.1) AT1G20160 515 / 1e-172 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT3G14240 510 / 1e-170 Subtilase family protein (.1) AT1G04110 505 / 2e-168 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038774 [exp] 1464 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039086 [exp] 1296 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 1294 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038772 [exp] 1222 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10016064 [exp] 788 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10006505 [exp] 690 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10023048 [exp] 676 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10014591 [exp] 642 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10007083 [exp] 594 / 0 AT5G45650 956 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171600 [exp] 857 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 850 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.011G165900 [exp] 842 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.006G001600 [exp] 833 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.001G469000 [exp] 764 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.011G050000 [exp] 755 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 754 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.005G067200 [exp] 753 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 751 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468900 [exp] 733 / 0 AT5G59810 730 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10039085 pacid=23150629 polypeptide=Lus10039085 locus=Lus10039085.g ID=Lus10039085.BGIv1.0 annot-version=v1.0 ATGGAGTTCCAAAGATCTGATCTTGTTCACTGTCTGTTAGTGTCATTCTTGTTCCAGACACTAGCCTTTGCTGCAGAGAGAAACTACATAGTGTACTTGG GATCCCATTCACATGGAGGCATCTCCACACTCTCCAATCCTGATGCTATTGTTCAAGCTGTCACTGAATCTCACTATAATCTCCTCGGATCGGTCCTAGG AAGTGAGAAAGCCAGAGATGCACTGGGATACTCATACACATGGAACATCAATGGCTTCTCTGCCAAGCTTGAAGAGGGAGAAGCTGCTGAAATTGCCAAA AATCCGGGAGTGGTCTCGGTGTTCTTGGATCGAGGGAGGAAGCTGCACACGACAAGATCATGGGATTACATGTCGCTTGAGAACCATGGTGCAGAAGCCA GCCCAGGAGCACTGTGGAAGGCAGCTAATTATGGTGAAGGAACAATCATAGCCACATTAGATTCTGGAGTTTGGGCTGAATCGAAGAGCTTCAACGATGA AGGATACGGTCCTGTACCATCTAAGTGGAAGGGAATCTGCCAGAACAACACCAAGGCTGGAGTCCCTTGTAACAGGAAGTTGATAGGTGCAAGATACTTC AGCAAAGGTTACGTCAGGGCAGGAGGCAAACCAGAGGACACTTTCGCCTCAGCTCGTGACTATCTCGGCCATGGAACTCACACCTTATCAACAGCAGGAG GGGACTTCGTTCCCCATGCTAAGATCTTCAACTCCACCGCGGGAACCGCGAAAGGTGGCTCACCTAAGGCCAGAGTCGCAGCTTACAAGGTCTGCTGGCC AAAAATCGACAACAACTCGTGCTTCGACTCCGACATCTTGGCTGCATTCGACGCTGCGATCAATGATGGTGTGGATGTCCTCTCGGTGTCCCTCGGTGGA GATCCTTCCAATTACTTCGAGGATTCGATCGCCATCGGCTCTTTCCATGCCGTCCAGAAGGGTATTGTTGTTGCTTGCTCCGCAGGTAACCAGGGTCCTA GCCCCAAAACCGTGTCAAACATTGCACCTTGGATCACAACGGTTGCAGCAAGGAGCTTGGATAGGAAGTTTACAGCTTTTGTTCAGCTTCAGAATGGCTT GCGCATTGAGGGGAAAACTCTCTACGGTTCTCTGACCGGAAACAAGACCTATCCACTCCTCCTTGCATCCAAAGTTAGGGCTGCCAACGTATCTATCAAC GACGCCCTTTTGTGCAAAGCCAACACATTGGATCCAAAGAAGGCAAGAGGAAAGATCTTGGCTTGCTTGATGGGAGGAAATGGAGGAGTAAGTAAGTCCC AAGTGGCGGCTTCGGCAGGTGCAGCTGGGATGATCCTCTGCAATGATAAGTTTTATGGTGATTTTCTCGAAGCCGGTCGTCACTTCCTGCCTACTGTTCA TATCAGCTACAAAGATAGCCTTGCTGTTTTCAACTACATCAATTCTACCAAGCACCCTCATGCATACATATCTCATCTGACACCTGAGATCAATGTTAAG CCTGCTCCAGTCATGGCATTCTTCTCTTCTGCTGGACCAAATATCATAACACCTCAGATTCTGAAGCCTGATATTACTGCTCCAGGAGTGGACATCTTTG CAGCTTGGACTGAAGCGAAACATTCAGAAAAAGGCGCTGACCCTCGCAAGTTACCTTTCAACATTGCTTCGGGAACATCAATGTCTTGCCCTCATGTCGC CGGAGTTTTTGGCCTCCTTAGAACCGTCAATCCTTACTGGAGCCCTGCTGCTATTCGCTCTGCAATCATGACAACAGCAAGAACAAGGGACAATACTGGG AACCGAATCCGGGATTATTTAATGGAGAAAGCCACACCATTCAGCTACGGATCTGGCCACATCAGGCCGAACCATGCGATGAATCCCGGCCTAGTGTTCG ACTTAAAGGAGACTGACTACTTGAACTTCCTATGTGCAAGCGGCTACAACAAGACTGTCTTGAGGCTTTTCACAAACACTCCATACAAGTGTCCTGAACC TGCTGTTAGCATCCTCGACCTCAACTACCCTTCCATCGCAGTCCCTGCGCTCCCTTCGACAGGTTCGATTACAGTGACTAGGAAGCTGAAGAATGTGGGG AAACCAGCCAAGTATGCTGTCTCGGTTAAGGAAGCGAAAGGGGTTTCGATTTCAGTAAAGCCTGATGTCCTGATGTTCGACAAGGAGGGAGAAGAGAAGG AGTTTAAGGTGACTCTGAAGGCCAAGAGGGCTGGTAAGGGAAAGAATTCGTACGTGTTTGGAGGAATTACATGGACGGATGGTGTCCACCATGTGAGAAG TCCCATTGCAGTTTCTCATGCTTAG
AA sequence Show only first row Show all	>Lus10039085 pacid=23150629 polypeptide=Lus10039085 locus=Lus10039085.g ID=Lus10039085.BGIv1.0 annot-version=v1.0 MEFQRSDLVHCLLVSFLFQTLAFAAERNYIVYLGSHSHGGISTLSNPDAIVQAVTESHYNLLGSVLGSEKARDALGYSYTWNINGFSAKLEEGEAAEIAK NPGVVSVFLDRGRKLHTTRSWDYMSLENHGAEASPGALWKAANYGEGTIIATLDSGVWAESKSFNDEGYGPVPSKWKGICQNNTKAGVPCNRKLIGARYF SKGYVRAGGKPEDTFASARDYLGHGTHTLSTAGGDFVPHAKIFNSTAGTAKGGSPKARVAAYKVCWPKIDNNSCFDSDILAAFDAAINDGVDVLSVSLGG DPSNYFEDSIAIGSFHAVQKGIVVACSAGNQGPSPKTVSNIAPWITTVAARSLDRKFTAFVQLQNGLRIEGKTLYGSLTGNKTYPLLLASKVRAANVSIN DALLCKANTLDPKKARGKILACLMGGNGGVSKSQVAASAGAAGMILCNDKFYGDFLEAGRHFLPTVHISYKDSLAVFNYINSTKHPHAYISHLTPEINVK PAPVMAFFSSAGPNIITPQILKPDITAPGVDIFAAWTEAKHSEKGADPRKLPFNIASGTSMSCPHVAGVFGLLRTVNPYWSPAAIRSAIMTTARTRDNTG NRIRDYLMEKATPFSYGSGHIRPNHAMNPGLVFDLKETDYLNFLCASGYNKTVLRLFTNTPYKCPEPAVSILDLNYPSIAVPALPSTGSITVTRKLKNVG KPAKYAVSVKEAKGVSISVKPDVLMFDKEGEEKEFKVTLKAKRAGKGKNSYVFGGITWTDGVHHVRSPIAVSHA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	0	1
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	2.2	1.0000
					Lus10005830 [exp]	3.2	1.0000
					Lus10009618 [exp]	3.9	1.0000
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	4.9	1.0000
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	5.0	1.0000
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	6.0	1.0000
					Lus10038463 [exp]	6.9	0.9998
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	7.0	0.9998
					Lus10018225 [exp]	7.3	0.9993
AT3G14880			unknown protein		Lus10013711 [exp]	7.7	0.9990

Compare expression of checked genes

Lus10039085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.