Plant FIBer expression Database

Lus10039090 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04160 159 / 1e-45 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
AT5G59810 149 / 8e-42 ATSBT5.4 Subtilase family protein (.1)
AT4G10550 126 / 7e-34 Subtilase family protein (.1.2.3)
AT4G10530 124 / 4e-33 Subtilase family protein (.1)
AT1G32960 124 / 8e-33 ATSBT3.3 Subtilase family protein (.1)
AT1G32940 122 / 3e-32 ATSBT3.5 Subtilase family protein (.1)
AT4G10520 122 / 3e-32 Subtilase family protein (.1)
AT4G21323 119 / 3e-31 Subtilase family protein (.1)
AT4G21650 119 / 4e-31 Subtilase family protein (.1)
AT1G66220 116 / 3e-30 Subtilase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039088
[exp]
335 / 6e-119 AT2G04160 159 / 3e-45 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Lus10038772
[exp]
309 / 2e-101 AT5G59810 815 / 0.0 Subtilase family protein (.1)
Lus10039087
[exp]
290 / 5e-94 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Lus10039085
[exp]
287 / 5e-93 AT5G59810 827 / 0.0 Subtilase family protein (.1)
Lus10039086
[exp]
283 / 1e-91 AT5G59810 850 / 0.0 Subtilase family protein (.1)
Lus10038774
[exp]
273 / 9e-88 AT5G59810 839 / 0.0 Subtilase family protein (.1)
Lus10016064
[exp]
162 / 4e-46 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Lus10006505
[exp]
130 / 5e-35 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Lus10023048
[exp]
122 / 2e-32 AT5G59810 762 / 0.0 Subtilase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G165900
[exp]
183 / 5e-54 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.001G468800
[exp]
183 / 6e-54 AT5G59810 939 / 0.0 Subtilase family protein (.1)
Potri.014G171600
[exp]
159 / 2e-45 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.005G067200
[exp]
157 / 8e-45 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.006G001600
[exp]
156 / 3e-44 AT5G59810 970 / 0.0 Subtilase family protein (.1)
Potri.001G469000
[exp]
155 / 3e-44 AT5G59810 754 / 0.0 Subtilase family protein (.1)
Potri.011G050100
[exp]
147 / 3e-41 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.011G050300
[exp]
147 / 4e-41 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.007G102100
[exp]
145 / 1e-40 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Potri.011G050000
[exp]
144 / 3e-40 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0570 PPP-I PF05922 Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence
>Lus10039090 pacid=23150731 polypeptide=Lus10039090 locus=Lus10039090.g ID=Lus10039090.BGIv1.0 annot-version=v1.0
ATGGGGTTCCGAAGTTATGATCTTGTTCATGTTCTGTTACTGTTATTCTTGTTCCAGACACTAGCCCTTGGTGCAGAGAAGAACTACATAGTGTACTTGG
GATCCCATTCACATGGAGGTATCTCCAAGCTCTCCAATCCTGAAGCTACTGTTCAAGCCGTCACTCAATCTCACTACAATCTCCTGGGATCAGTCCTAGG
AAGTGCGAAAGCTAGAAACTCACTGGGATACTCATACACGTGGAACATCAAGGGCTTCTCTGCCAAGCTTGAGGAGGAAGAAGCTGCTGAAATTTTCAAT
TATCCGGGAGTGGTTTTGGTGTTCTTGGATCGAGTAAGGAAGCTGCAAACGACAAGATCATGGGACTATATGGGACTTGAGAGCCATGGTGCAGAATCCA
GCCCTGGACCGCTGTGGAAGGCAGCCAATTACGGTGAAGGAACAATCATAGCGAATATAGATACTGGGGTTTGGCCTGAATCGAAGAGCTTCGACGATGA
AGGTTATGGTCCTGTGCCGTCCAAGCGGAAGGGCATCTGCCAGAACAACACCAAGGCTGGAGTTCCTTGA
AA sequence
>Lus10039090 pacid=23150731 polypeptide=Lus10039090 locus=Lus10039090.g ID=Lus10039090.BGIv1.0 annot-version=v1.0
MGFRSYDLVHVLLLLFLFQTLALGAEKNYIVYLGSHSHGGISKLSNPEATVQAVTQSHYNLLGSVLGSAKARNSLGYSYTWNIKGFSAKLEEEEAAEIFN
YPGVVLVFLDRVRKLQTTRSWDYMGLESHGAESSPGPLWKAANYGEGTIIANIDTGVWPESKSFDDEGYGPVPSKRKGICQNNTKAGVP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Lus10039090
[exp]
0 1

Lus10039090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.