Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06980 600 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT4G09730 181 / 6e-49 RH39 RH39 (.1) AT1G31970 134 / 6e-33 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 133 / 6e-33 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G14610 133 / 2e-32 DEAD box RNA helicase family protein (.1.2) AT4G00660 130 / 4e-32 ATRH8 RNAhelicase-like 8 (.1.2) AT2G45810 129 / 2e-31 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 129 / 3e-31 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G55150 124 / 5e-30 DEA(D/H)-box RNA helicase family protein (.1) AT2G47330 124 / 3e-29 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038771 [exp] 1120 / 0 AT3G06980 645 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10011780 [exp] 229 / 6e-68 AT2G33385 228 / 9e-71 actin-related protein C2B (.1.2) Lus10017781 [exp] 165 / 5e-43 AT4G09730 732 / 0.0 RH39 (.1) Lus10032135 [exp] 135 / 4e-33 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032133 [exp] 134 / 1e-32 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10017804 [exp] 129 / 1e-31 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10015627 [exp] 129 / 2e-31 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 129 / 2e-31 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030377 [exp] 128 / 3e-31 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G004700 [exp] 633 / 0 AT3G06980 635 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G198300 [exp] 163 / 2e-42 AT4G09730 743 / 0.0 RH39 (.1) Potri.019G130900 [exp] 142 / 1e-35 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 141 / 2e-35 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.014G081100 [exp] 130 / 6e-32 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.002G157500 [exp] 128 / 3e-31 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.017G071400 [exp] 129 / 1e-30 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 127 / 2e-30 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.005G000100 [exp] 126 / 4e-30 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.003G098800 [exp] 124 / 8e-30 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10039091 pacid=23150290 polypeptide=Lus10039091 locus=Lus10039091.g ID=Lus10039091.BGIv1.0 annot-version=v1.0 ATGGCGGCTATAGTTACTCAATTCACTCAATATTCCTCACCACTCAGCACCAGCATCGGCCCAACAACTTCTCACTGCCGCAGTAGCTGCGTTATCATTC TCTTGAAGCGACCTAGCCATGGCGGCAGCCGGCGTCTTACTTCTCTTCAAGCTTCCACTTCTTCTTCTTCATCATCTCCGCGATTTCAGTCGCGTGCCTC TCCTGCACCAGTCCAGGCAGCCGACGACCGGGACTCGGATAACGAATTCCGTCCTCCGCCAGACATTCAAAGGTCAGCAACGATTCGCACCAAGGGACAG TATGTGAGTTCATCGAAGCTGACATCTCTAAGGTCGAGAATCCTTAGCGGGGATGCTTCTTCAACAATGGAAAAGCATGTGGAGAAACAGGAGGAGGAGG AGTCAGCGTCCAGATCATCAGCAAGTAGAGGTAAAGAAAAGTCGTTAGATGCCCCAAACAGGAGAAGGGTTCCCAGAGAGAGAGGTCCCGGTTACGAGAG GCTTGATCGGCGAGATATAGAGGAAACGAGGAGCTTCAGGAATGATGAACGAGATGATAACGTTCACCGGAGATCCAAGTTTCAAAGTACGTCTTATGAT AAGCCTCCAAGGTCCGATTTCAAAAGATTTGTTCCGGAATCCACCCGTGCCCGAGGCTATACTGCTTCAAGCTCGAGGAGGTGGGGTGATGAAGGCTCGG TTGGTAGCTTCAGACCCAGGTCACATTTCCCTCCTCAAAGTGAAAGGCAATATAAACCTTCTCCAGGAGATGATTTCTTCAGTAGGAAATCCTTCAAAGA CGTGGGATGCGAAGAATATATTATTGATGCTTTGAAAGCACAGCTTTTTCAGCGTCCTTCACAGATTCAGGCCATGGCATTTGCTCCTGTGATGGAAGGG AAGACCTGTGTCATAGCCGATCAAAGTGGATCAGGGAAAACCCTGGCATATCTTATCCCTGCAATTCAGCGTATTAAGGAGGAGGAAGCACAAACAGTTA GTGGATCTGCAGCTCGAAAAAGTCCTCAAGTATTCATAATGGTGCCAACCGCTGAGTTGGCTTCTCAGGTTCTGAATAATTGTCGATCGATTTCAAAGTC TGGGGTTCCATTTCGGTCCATGGTTGCAACAGGGGGATTTCGGCAGAAAACTCAATTGGAAACTCTAGAACAAGGTGTTGATGTGCTGATAGCAACACCT GGTCGTTTCCTTTTCCTGATTAAACAAGGAGTCTTGAAATTAGAAGATCTTAGATGCGCTGTTCTGGACGAGATAGATATACTGTTTAAGGATGAAGACT TTGAAGCTGCTCTCCAGCTCTTGATAAACTCGTCGCCTATTACTGCACAATATCTGTTCGTGACTGCAACTTTACCAGTAGACGTGTACAACAAGCTTGT GGAAATGTTCCCTGATTGTACAATGATCATGGGTCCAAGCATGCACAGAACGAGCGTGGGGCTTGAAGAGGTACTAATCGATTGCAGTGGGGATATTGGG GCCGAAAAGACTCCAGAGACAGCATTTGAGAATAAGAAATCTGCTTTGCTCCAACTTGCAGGGCAAAGTCCCGTCTCCAAGACGATTATTTTCTGCAACA AGATCGAGACGTGCAGAAAAGTTGAAAATGTACTAACAAGGTTCGATAGGAAAGGAGTTCAGGCCCGAGTCCTTCCGTTCCATGCTGCTCTGGCTCAAGA TTCACGGGCTGCAAATATGAAAGAGTTCATGAAACAAAATCACTCCACAGAGCAGTCTCTTTTCCTGGTTTGTACGGATAGAGCATCGCGTGGAATTGAC TTTGCTGGCGTGGATCACGTTGTGCTGTTCGACTTCCCACGGGATCCAAGCGAATATGTCCGGAGGGTGGGAAGAACTGCGAGAGGTGCTGGAGGGAAAG GGAAGGCGTTTGCGTTTGTGGTAGGGAAGCAAGTTTCTCTGGCGCGGAAGATAATAGACCGCAACCAGAAAGGACATCCGTTGCATGATGTGCCAGCAGC TTATGAGCTGATGCCTTGA
AA sequence Show only first row Show all	>Lus10039091 pacid=23150290 polypeptide=Lus10039091 locus=Lus10039091.g ID=Lus10039091.BGIv1.0 annot-version=v1.0 MAAIVTQFTQYSSPLSTSIGPTTSHCRSSCVIILLKRPSHGGSRRLTSLQASTSSSSSSPRFQSRASPAPVQAADDRDSDNEFRPPPDIQRSATIRTKGQ YVSSSKLTSLRSRILSGDASSTMEKHVEKQEEEESASRSSASRGKEKSLDAPNRRRVPRERGPGYERLDRRDIEETRSFRNDERDDNVHRRSKFQSTSYD KPPRSDFKRFVPESTRARGYTASSSRRWGDEGSVGSFRPRSHFPPQSERQYKPSPGDDFFSRKSFKDVGCEEYIIDALKAQLFQRPSQIQAMAFAPVMEG KTCVIADQSGSGKTLAYLIPAIQRIKEEEAQTVSGSAARKSPQVFIMVPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLETLEQGVDVLIATP GRFLFLIKQGVLKLEDLRCAVLDEIDILFKDEDFEAALQLLINSSPITAQYLFVTATLPVDVYNKLVEMFPDCTMIMGPSMHRTSVGLEEVLIDCSGDIG AEKTPETAFENKKSALLQLAGQSPVSKTIIFCNKIETCRKVENVLTRFDRKGVQARVLPFHAALAQDSRAANMKEFMKQNHSTEQSLFLVCTDRASRGID FAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFAFVVGKQVSLARKIIDRNQKGHPLHDVPAAYELMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10039091 [exp]	0	1
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	2.0	0.9526
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	3.0	0.9281
AT5G01590			unknown protein		Lus10012500 [exp]	4.0	0.9380
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10020990 [exp]	7.3	0.9164
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	8.9	0.9145
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10001341 [exp]	9.2	0.8876
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10011108 [exp]	12.3	0.9170
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	14.3	0.8845
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Lus10030818 [exp]	15.9	0.9022
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	16.9	0.9164

Compare expression of checked genes

Lus10039091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.