Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48350 216 / 6e-73 EMB3105 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1) AT1G14205 76 / 6e-18 Ribosomal L18p/L5e family protein (.1) AT3G17626 61 / 5e-13 structural constituent of ribosome (.1) AT5G27820 44 / 4e-06 Ribosomal L18p/L5e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038770 [exp] 329 / 1e-117 AT1G48350 216 / 6e-73 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1) Lus10030465 [exp] 76 / 1e-17 AT1G14205 174 / 2e-56 Ribosomal L18p/L5e family protein (.1) Lus10012820 [exp] 73 / 2e-16 AT1G14205 182 / 2e-59 Ribosomal L18p/L5e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G005000 [exp] 236 / 9e-81 AT1G48350 229 / 4e-78 EMBRYO DEFECTIVE 3105, Ribosomal L18p/L5e family protein (.1) Potri.008G087100 [exp] 73 / 8e-17 AT1G14205 202 / 2e-67 Ribosomal L18p/L5e family protein (.1) Potri.007G100900 [exp] 39 / 0.0005 AT5G27820 155 / 3e-50 Ribosomal L18p/L5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00861 [flax] [poplar] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence Show only first row Show all	>Lus10039092 pacid=23150490 polypeptide=Lus10039092 locus=Lus10039092.g ID=Lus10039092.BGIv1.0 annot-version=v1.0 ATGGCTACTTGTTCCTTCTCCACCAACTTTGTGGGCTTCAGCCACAATCACCTATCGGCAGCTGTCGCCGGGAAGCCACGCTTGAGCTCAATTGCTCTCC CCACCCGACTCACGGTTGAAGCCAAATCCAGAACCAGAGGAGACGACAGGACCGCTCGCCATATTCGAATCAGAAAGAAGGTTGAAGGCACTACAGAGCG GCCGAGGTTGTCTGTCTTCCGTTCAAACAAGCATTTCTACGTCCAGGTGATCGATGACTCCAAGATGCACACTCTCGCTGCTGCTTCCACAATGCAGAAG GTGATGGCGGAGGAGCTCAACTTCACCGCAGGTCCTACCATTGAAGTAGCAAAAAAGGTGGGTGAAGCTATAGCGAAGGCATGCTTGGAGAAAGGGATAA CGAAAGTGGCCTTTGACAGAGGTGGCTATCCATACCACGGTCGAGTAAAAGCTCTTGCTGATGCAGCTCGTGAGAACGGGCTTCAGTTCTAA
AA sequence Show only first row Show all	>Lus10039092 pacid=23150490 polypeptide=Lus10039092 locus=Lus10039092.g ID=Lus10039092.BGIv1.0 annot-version=v1.0 MATCSFSTNFVGFSHNHLSAAVAGKPRLSSIALPTRLTVEAKSRTRGDDRTARHIRIRKKVEGTTERPRLSVFRSNKHFYVQVIDDSKMHTLAAASTMQK VMAEELNFTAGPTIEVAKKVGEAIAKACLEKGITKVAFDRGGYPYHGRVKALADAARENGLQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	0	1
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	1.4	0.9824
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	2.0	0.9796
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	2.8	0.9748
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10013168 [exp]	3.0	0.9686
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	3.2	0.9709
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	3.9	0.9765
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10040693 [exp]	4.0	0.9687
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	5.3	0.9662
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	5.9	0.9690
AT5G65220			Ribosomal L29 family protein ...		Lus10019653 [exp]	6.2	0.9662

Compare expression of checked genes

Lus10039092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.