Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 945 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G72520 777 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 774 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G67560 747 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 694 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 647 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031810 [exp] 1232 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 1164 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 1098 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 1086 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 1036 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031236 [exp] 993 / 0 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 989 / 0 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10031809 [exp] 919 / 0 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10013151 [exp] 786 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015500 [exp] 1120 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 1117 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 1108 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 1080 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 1059 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.008G178000 [exp] 792 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G057100 [exp] 788 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 784 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.013G022000 [exp] 674 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 669 / 0 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10039094 pacid=23150555 polypeptide=Lus10039094 locus=Lus10039094.g ID=Lus10039094.BGIv1.0 annot-version=v1.0 ATGATGAAGCCGCAGCTCCACCGCCGGTGGCAGCTGAGGGTATTCACTCCGGCCAAAAAGAGGACTACGTACTTCCGCCCTAGCGCCGCCACGGCCTCTC ATCTCCAGCTCCCTTCCGTTTTGCCGCCGGCAGCATCATCATTCTCCATGGTCCGGAGGAGGAGGAATAATAATGTCATAATCAGAGCTGCAGCTCCCGG TGAGTCCTCGGAGGAGGAGAAGCGGGTAGAGGTAAAGGCGGTGATGAGGGTAAAACAGCCATCGGGATTTGTTTCGAAAATCGGGATCGGCGCGGAGGAC GTTTCCAGCTGGTTCGGTCAAACTTTCCGACTGCTCCTCGTTAGCACTCAACTTGACGCTGAGACGGGAGTTGAGAAGCCGAAGATAGAAGCAAACGCAA AGAAAGTAAGCGAGGAGAATGGAGAGATCAAGTACGAGGCAGAGTTCGAAGTGCCGGTTGATTTTGGAGAAGTCGGTGGGGTTATGGTTGTGAATCAGCA AACGAATGAGATGTTCTTGAAGGACATTGTCCTCTATGATCTTCCCAAAACTGTTGGTCCAGTCAATGTGGTATGTGGGTCTTGGATTCAACCCAACGAC GATGGCCAAGACTCGAATGAGAGGATTTTCTTCACCACTAAGTCGTACTTGCCGTCGGAGACGCCGGACGGACTAATCAGGTACCGGGAAGAAGAGCTGA ACCTTATTCGAGGCAATGGCCAGGGAGAGCGCAAGAAAGGCGACCGGATCTACGACTATGATGTCTACAACGACCTCGGCGATCCGGATACAAGTCCGGA TCTCACCCGACCCGCCATCGGCGGCAAAGAAATCCCCTATCCTCGCCGATGCCGGACCGGACGGCCTCGAACTGAATCCGATCCGATGACGGAATCGAAG ACTATCGGGGAAAACTACGTCCCACGAGACGAGGAATTTTCAGAGGTGAAAGATTTGAGTTTCAATAGCAAGTCGGTTTCGTCGATTCTCCGGGCGGTGG TGCCTTCGGTCGAGCCAATCTTCACAGATGTTGATCTCGGATTCCCTCAATTCACAGCTATTGATTCGTTGTACGAGAACGGGTTCAAAATTCCGCCTCG TACCGAGGATTCTTCTTTGACGGGGTTACTGCCCAGGCTCATCAGGACCGCCACTGAAGGTGCCAACGACGTCTTGCGGTTTGAGCTCCCCGACACCATG GAGAGAGATAGATTTTTCTGGTTAAAGGACGAGCAGTTCGGTAGACAGACACTTGCTGGTGTTAATCCCTGCTGCATAGAGCTTGTTAGAGAATGGCCAT TGAAGAGTAAGCTTGACACAGAGACTTATGGTAATCCAGATTCTGCAATTACCACTGAAATAGTTGAGAGACAAATAAGAGCATACATGACTCTTGATGA GGCGATGAAGCAGAAGAAGCTATTCATCCTTGATTACCATGACTTGTTGTTACCCTTTGTGGGGCTTGTTAGACAGCAGAAAGGAACTACGCTCTATGGG TCACGAGCACTGTTTTTTCTGACACCAGTTGGCACATTGAAGCCTGTTGCCATCGAACTCACCAGGCCTCCCATAGACGGGAAGCCACTGTGGAAACGAG TCTTCACCCCTGGAACTTTCTCTCCAACTGATGAGTGGCTATGGAAGCTTGCCAAAACTCATGTCCTTGCCCATGACGTGGGGTATCACCAATTAATTAG CCATTGGCTGAGAACGCATTGTTGCACGGAACCATATATCATTGCTTCCAATCGGCAACTAAGTGCACTGCACCCAATCTACAGGCTATTGCTACCGCAC TTCCGTTACACCATGGATATCAATGCTTTAGCTCGTAAAATTCTGATTAATGCTGGTGGCTTTATCGAATCCTGTTTCTCTCCTCTCAAGTACTCCATTC AGTTCAGCTCAGTTGTCTACGACCAAAAATGGCGATTCGACTATGAGGCACTCCCGAAGGACCTTATCAGGCGGGGGATGGCAGTTGAAGACCCATCAGC TCCGCACGGCCTAAAACTAACGATCGAGGACTACCCATATGCTAACGACGGTCTAAAGTTTTGGGCAGCATTGAAGCAATGGGTCACTGACTACGTCAAT CGCTACTACCCAGACCCAACCGTGGTGGCTTCCGATACAGAGCTTCAATCATGGTGGACAGAGATTCGTACAGTGGGCCATCAGGACAAGAAAGACGAAC CCTGGTGGCCACAGCTCAAGACTTGCGAAGACCTCGTTCAGATCCTCACAACCATTATGTGGGTTGCATCAGGTCACCACGCTGCTGTTAACTTCGGACA ATACTCTTACTATGGCTATATTCCTAACAGACCGCCGATCGCGAGGAAGAAGATGCCCAACGAAGACGAGACCGAGCTAGAGTGGAACAAGTTTGCGGAG AAACCAGAAGCGGTCCTTCTCGAGACGTATCCGTCACAGTTCCAGACTGCGAAGGTTATGGCTGTGATGGACATTTTGTCAGCTCACTCGGTGGACGAAG AGTACGTGGGGAAGGCGATGGAGCCGTCTTGGAGGGACGACCCAGTTATTAAGGCAGCGTTCGAGAAGTTCAGCGGGAGGTTGATGGAGCTGGAAGGAGA AATCGACATGCGAAATACGGACCAGGAGTTGCGAAACAGGAACGGAGTTGGAATCCTGCCGTACGAGCTCTTGAAGCCGTTCTCTGAGCCTGGTGTTACT GGCAAAGGTGTTCCTTACAGCATCTCCATCTGA
AA sequence Show only first row Show all	>Lus10039094 pacid=23150555 polypeptide=Lus10039094 locus=Lus10039094.g ID=Lus10039094.BGIv1.0 annot-version=v1.0 MMKPQLHRRWQLRVFTPAKKRTTYFRPSAATASHLQLPSVLPPAASSFSMVRRRRNNNVIIRAAAPGESSEEEKRVEVKAVMRVKQPSGFVSKIGIGAED VSSWFGQTFRLLLVSTQLDAETGVEKPKIEANAKKVSEENGEIKYEAEFEVPVDFGEVGGVMVVNQQTNEMFLKDIVLYDLPKTVGPVNVVCGSWIQPND DGQDSNERIFFTTKSYLPSETPDGLIRYREEELNLIRGNGQGERKKGDRIYDYDVYNDLGDPDTSPDLTRPAIGGKEIPYPRRCRTGRPRTESDPMTESK TIGENYVPRDEEFSEVKDLSFNSKSVSSILRAVVPSVEPIFTDVDLGFPQFTAIDSLYENGFKIPPRTEDSSLTGLLPRLIRTATEGANDVLRFELPDTM ERDRFFWLKDEQFGRQTLAGVNPCCIELVREWPLKSKLDTETYGNPDSAITTEIVERQIRAYMTLDEAMKQKKLFILDYHDLLLPFVGLVRQQKGTTLYG SRALFFLTPVGTLKPVAIELTRPPIDGKPLWKRVFTPGTFSPTDEWLWKLAKTHVLAHDVGYHQLISHWLRTHCCTEPYIIASNRQLSALHPIYRLLLPH FRYTMDINALARKILINAGGFIESCFSPLKYSIQFSSVVYDQKWRFDYEALPKDLIRRGMAVEDPSAPHGLKLTIEDYPYANDGLKFWAALKQWVTDYVN RYYPDPTVVASDTELQSWWTEIRTVGHQDKKDEPWWPQLKTCEDLVQILTTIMWVASGHHAAVNFGQYSYYGYIPNRPPIARKKMPNEDETELEWNKFAE KPEAVLLETYPSQFQTAKVMAVMDILSAHSVDEEYVGKAMEPSWRDDPVIKAAFEKFSGRLMELEGEIDMRNTDQELRNRNGVGILPYELLKPFSEPGVT GKGVPYSISI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10039094 [exp]	0	1
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10038158 [exp]	2.0	0.9259
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	2.4	0.9249
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10042829 [exp]	3.5	0.9192
					Lus10039628 [exp]	6.3	0.8349
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10032511 [exp]	8.1	0.7948
					Lus10028110 [exp]	9.9	0.8369
AT4G22840			Sodium Bile acid symporter fam...		Lus10028901 [exp]	10.4	0.7633
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10021376 [exp]	12.2	0.8568
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10034031 [exp]	12.5	0.8818
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10024960 [exp]	23.5	0.8453

Compare expression of checked genes

Lus10039094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.