Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17180 696 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 451 / 2e-155 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 443 / 2e-152 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 442 / 3e-152 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 430 / 2e-147 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 429 / 3e-147 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 418 / 1e-142 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 415 / 3e-141 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 400 / 2e-135 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 397 / 2e-134 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040579 [exp] 445 / 2e-153 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 444 / 6e-153 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002633 [exp] 444 / 9e-153 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031098 [exp] 441 / 2e-151 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10024535 [exp] 441 / 3e-151 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10020261 [exp] 437 / 3e-150 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10001183 [exp] 429 / 2e-146 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 426 / 3e-145 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10042269 [exp] 422 / 5e-144 AT5G58480 606 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G002800 [exp] 768 / 0 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G002100 [exp] 763 / 0 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 461 / 4e-159 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 459 / 3e-158 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.013G059700 [exp] 454 / 1e-156 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G072300 [exp] 449 / 2e-154 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G076500 [exp] 447 / 3e-154 AT5G58480 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 447 / 4e-154 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.019G032900 [exp] 446 / 9e-154 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G150400 [exp] 436 / 8e-150 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10039095 pacid=23150303 polypeptide=Lus10039095 locus=Lus10039095.g ID=Lus10039095.BGIv1.0 annot-version=v1.0 ATGTCGGGATTGAGAGCAACTGCAAAAAGTCTGCTGCTTTTTTTAACGGTTCTATGCTGGTGGTGTAGAGTTGGGGAATCAGCGATTGGGGTGAACTGGG GAACGCTGTCGTTTCACCGGCTGAAGCCTTCCACGGTGGTAGATCTGTTGAAGGAGAACAAGATTGGGAAAGTGAAGCTGTTTGATGCTGACTCAGGTTC CCTCCAAGCTCTGATGGGGAGCGGGATTCAAGTTATGGTTGGGATTCCTAACGAGATGCTTTCAACTATCAGCTCTTCCACTGCTGCTGCTGATTTGTGG GTTCGCCAGAATGTTTCCAGATATGTCGTTAAAGGCGGCGCTGATATCAGATATATTGCTGTTGGGAACGAGCCGTTCCTCACAAGTTACTCGGGTCAAT TTCAATCGTATGTCATGCCGGCTTTACTGAATCTACAACAATCTCTGACAAAGGCGAATCTTGCTGGATATGTCAAGCTAGTCGTCCCGTGCAATGCTGA TGCTTATGAGGCGGCTTCTCTTCCTTCACAAGGGGCTTTCCGGCCTGAGCTTACTCAGATCATCACACAACTTGTTTCCTTCCTGAACTCGAACGGTGCT CCTTTTGTCGTCAACATTTATCCATTTCTCAGTCTCTATGGGAACTCAGATTTCCCGCAAGACTATGCCTTTTTTGAGGGAACGACGCATGCTGTTACTG ACGGCCCTAATGTTTACACGAATGCCTTCGATGGGAACCTCGACACTTTAGTATCGGCCCTCAGTAAGCTCGGATATGGCCAGATGCCTATAGTCATCGG AGAGGTAGGGTGGCCAAGCGATGGAGCCCCTGGTGCTAACCTCACTGCAGCAAAAGTATTCAACCAAGGTCTGATTAACCATGTCGTCGGTAACAAAGGG ACCCCTCTTAGACCGGGTGTGCCTCCTATGGATGTCTATATTTTCAGCCTGCTCGATGAAGGAGCAAAGAGTGTACTCCCTGGTAACTTCGAACGACATT GGGGAATCTTCTCGTTTGATGGGCAAGCTAAATATGCCTTGAACCTTGGTCAGGGAAACAAGCTCTTGAAGAATGCAAAGAATGTTCAGTATCTGCCATC TAGGTGGTGTGTGGCAGATTCGTCGAAAGATCTAACTAACGTGGCGAACCACATGAGGATTGCATGTAGCGAGGCGGATTGCACGACCCTAAACTACGGC GGATCTTGTAACGAGATTGGAGCAAAGGGAAACATCTCTTATGCGTTCAACAGTTACTATCAACTGAACATGCAGAACGAAAAAAGTTGCGATTTTGATG GACTTGGAATGGTGACATTCCTCGACCCCTCGGTTGGCGAGTGCAGGTTTCTTGTTGGGGTAACGGAGAGCAACCATTCATCATCATCGTGTTCCGGACT GTCTCCTAGATTCAGAGTCATGATTTGGTTGTTCTTCATTTGGGCCACTGCCAGGTTCTTTCCAATGTGA
AA sequence Show only first row Show all	>Lus10039095 pacid=23150303 polypeptide=Lus10039095 locus=Lus10039095.g ID=Lus10039095.BGIv1.0 annot-version=v1.0 MSGLRATAKSLLLFLTVLCWWCRVGESAIGVNWGTLSFHRLKPSTVVDLLKENKIGKVKLFDADSGSLQALMGSGIQVMVGIPNEMLSTISSSTAAADLW VRQNVSRYVVKGGADIRYIAVGNEPFLTSYSGQFQSYVMPALLNLQQSLTKANLAGYVKLVVPCNADAYEAASLPSQGAFRPELTQIITQLVSFLNSNGA PFVVNIYPFLSLYGNSDFPQDYAFFEGTTHAVTDGPNVYTNAFDGNLDTLVSALSKLGYGQMPIVIGEVGWPSDGAPGANLTAAKVFNQGLINHVVGNKG TPLRPGVPPMDVYIFSLLDEGAKSVLPGNFERHWGIFSFDGQAKYALNLGQGNKLLKNAKNVQYLPSRWCVADSSKDLTNVANHMRIACSEADCTTLNYG GSCNEIGAKGNISYAFNSYYQLNMQNEKSCDFDGLGMVTFLDPSVGECRFLVGVTESNHSSSSCSGLSPRFRVMIWLFFIWATARFFPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17180			O-Glycosyl hydrolases family 1...		Lus10039095 [exp]	0	1
AT3G12110		ACT11	actin-11 (.1)		Lus10040826 [exp]	1.4	0.9367
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	1.7	0.9382
AT1G20950			Phosphofructokinase family pro...		Lus10025167 [exp]	2.8	0.9064
AT5G06940			Leucine-rich repeat receptor-l...		Lus10011302 [exp]	3.2	0.9188
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	4.6	0.9290
AT2G41770			Protein of unknown function (D...		Lus10035458 [exp]	8.0	0.9231
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	8.5	0.9095
AT1G80510			Transmembrane amino acid trans...		Lus10034093 [exp]	10.0	0.9008
AT3G12110		ACT11	actin-11 (.1)		Lus10016558 [exp]	11.6	0.8888
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	13.4	0.9020

Compare expression of checked genes

Lus10039095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.