Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13300 120 / 9e-30 VCS VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13290 116 / 3e-28 VCR varicose-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039116 [exp] 238 / 3e-70 AT3G13290 1233 / 0.0 varicose-related (.1) Lus10038767 [exp] 227 / 4e-70 AT3G13300 528 / 3e-175 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038742 [exp] 186 / 3e-52 AT3G13300 733 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038768 [exp] 109 / 9e-30 ND / Lus10038743 [exp] 73 / 3e-16 ND / Lus10039115 [exp] 51 / 2e-08 ND / Lus10018816 [exp] 46 / 1e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G002100 [exp] 190 / 1e-53 AT3G13300 714 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G001400 [exp] 188 / 4e-53 AT3G13290 1170 / 0.0 varicose-related (.1) Potri.001G469500 [exp] 117 / 1e-28 AT3G13300 1236 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G166400 [exp] 115 / 6e-28 AT3G13300 1203 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039096 pacid=23150463 polypeptide=Lus10039096 locus=Lus10039096.g ID=Lus10039096.BGIv1.0 annot-version=v1.0 ATGAACATGAACATGAAGCTAGCGTCCCCAACCAAGCTTCCCAAGGGTCACCATCTGATCGGCAGTCAAGTCGTGTACGATATCGATACGAGGATGCGAG GTGAGGTGCAGCCTCAACTTGTATCTACTCCCATTACCAAGTATTGCTCGGATCCTGTCCTTGTTCCTGGCCAGCGGATTGCGATCACATTCTTTAACCA AGCTGTAGCCTTGCCTCGAGCCGGTCTGTTTCTACTGGCGAATGCAAAGAAGAATGCAATATACGCTCTTCACATCGAGTACGATCCATGTCCAGCTGCA ACCCGCATGGATTACATAGCCGAGTATACAGTTACAATCCCGATTCTGAGTCTGACCGGAACTAGTGGTAGTTTGCTGAATGGTGAACACATTGTGCAAC TGTCCTGTGTTCAGACAACGGCTATCCAGCAGTATGCATTGAACTTGTTGCAGTATCTGCCACCTCCCATAGAAAATGTTGAGTTGAAGAAATCAGAACC TAATGCTTCTCGTGCTTTTGATGCTGTAGTTTCTAATGCTTCTGCTGCAACTGAGTCGTCTCTTGGAAATAAACCCATCGAGATATCTGCGGGTAGCACA ACTTCAATTTCAAGTCCTTTTAATTCGACAGATTCATCGAACGAACCAGGCCGCAGTTCTGGTCCTTATCGTAACGATGCTTCTGTCTCCCAGATATCAA CCCTGCAAGATACACTTGACCAGGTGATGAATATGCAGAAAGAGATGCAAAAACAGATGAACTCGATTATGTCAGTGATGATTTCAGTGAAAGATACACT TGACCAGGTCACCAGAGCTACAAATGTCGTCGAACATGAGGAAACAAGCGCCACCATGGCCATTTCTGCTGATGCAGGCCGAGTCCCGCCGGGACCTGTT ATTACCTCTACTACTAGCCCCCAGCAGGGGGAGTTTGTTTTCCAGCCACAAGCAGGCTGCCGCTGTTGTTATTACGTAAAGAATTCATCTGGACTCTATG TTTGTGGCTATGCATGCTGTGTTGATGGCTGTTGCTGA
AA sequence Show only first row Show all	>Lus10039096 pacid=23150463 polypeptide=Lus10039096 locus=Lus10039096.g ID=Lus10039096.BGIv1.0 annot-version=v1.0 MNMNMKLASPTKLPKGHHLIGSQVVYDIDTRMRGEVQPQLVSTPITKYCSDPVLVPGQRIAITFFNQAVALPRAGLFLLANAKKNAIYALHIEYDPCPAA TRMDYIAEYTVTIPILSLTGTSGSLLNGEHIVQLSCVQTTAIQQYALNLLQYLPPPIENVELKKSEPNASRAFDAVVSNASAATESSLGNKPIEISAGST TSISSPFNSTDSSNEPGRSSGPYRNDASVSQISTLQDTLDQVMNMQKEMQKQMNSIMSVMISVKDTLDQVTRATNVVEHEETSATMAISADAGRVPPGPV ITSTTSPQQGEFVFQPQAGCRCCYYVKNSSGLYVCGYACCVDGCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13290		VCR	varicose-related (.1)		Lus10039096 [exp]	0	1
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10000771 [exp]	10.0	0.7351
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031738 [exp]	11.6	0.7088
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024367 [exp]	14.7	0.6787
AT3G07600			Heavy metal transport/detoxifi...		Lus10016060 [exp]	26.2	0.7066
					Lus10011769 [exp]	26.7	0.6432
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	30.3	0.7096
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10029410 [exp]	32.9	0.6892
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	40.6	0.6578
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10042522 [exp]	47.9	0.6825
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10018342 [exp]	54.1	0.6716

Compare expression of checked genes

Lus10039096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.