Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55990 374 / 2e-128 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT4G26570 372 / 7e-128 ATCBL3 calcineurin B-like 3 (.1.2) AT5G16760 360 / 7e-122 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT4G16350 290 / 1e-95 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G08170 261 / 1e-82 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G17615 244 / 3e-78 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G47100 241 / 8e-77 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G26560 234 / 3e-74 CBL7 calcineurin B-like protein 7 (.1) AT5G24270 234 / 6e-74 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G33000 234 / 6e-74 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038765 [exp] 622 / 0 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10038764 [exp] 423 / 3e-148 AT5G55990 375 / 5e-134 calcineurin B-like protein 2 (.1) Lus10035811 [exp] 388 / 9e-133 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10011028 [exp] 253 / 2e-81 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10035662 [exp] 257 / 3e-81 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10022407 [exp] 248 / 9e-80 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10018108 [exp] 248 / 2e-79 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10032808 [exp] 244 / 3e-76 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 238 / 1e-73 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G003500 [exp] 399 / 1e-138 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.006G002900 [exp] 389 / 1e-134 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.019G047200 [exp] 386 / 7e-132 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.001G371700 [exp] 371 / 2e-127 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 363 / 2e-124 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.001G140000 [exp] 341 / 8e-114 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.003G094100 [exp] 340 / 1e-113 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.005G149800 [exp] 270 / 4e-86 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.012G015100 [exp] 251 / 7e-81 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.003G084200 [exp] 247 / 2e-79 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF05770 [flax] [poplar] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10039098 pacid=23150339 polypeptide=Lus10039098 locus=Lus10039098.g ID=Lus10039098.BGIv1.0 annot-version=v1.0 ATGGAGCAGTTCGTAGGGGGGATGAAGCATTTGTGTGCAGCAATTGCAAATTGTTGTGATGCTGATTTGTATAAGCAACTCAGGGGCTTGCAAGATCCAG AAGCTCTTGCTAGAGAGACAGTGTTTAGCGTGAGTGAAATAGAAGCACTTTATGAACTGTTTAAGAAGATTAGCAGTGCGGTTATTGACGATGGGCTGAT CAACAAGGAAGAATTTCAACTAGCATTGTTCAAAACAAATAAGAAGGAGAGCTTATTTGCAGATCGGGTATTTGATTTGTTTGACTCAAAGCATAATGGC GTGCTTGGTTTTGAAGAGTTTGCACATGCCTTGTCAGTCTTCCACCCTAATGCGCCTATCGATGATAAGATTGAATTTTCATTCCAGTTGTATGATCTCA AACAGCAAGGATTCATTGAGAGACAGGAGGTGAAGCAAATGGTAGTGGCGACGCTTGCTGAATCCGGTATGAATTTGTCAGATGATGTAATTGAAAGCAT CATTGACAAGACATTCGAGGAGGCCGATACCAAGCATGATGGGAAGATCGACAAAGAAGAATGGCGAAGTCTGGTTTTGAGGCATCCTTCACTGTTGAAG AACATGACCCTCCAATATCTGAACAGAGCAATGGCGAAACGCTACAGAGTGGGATTCGCCCTCGCTTCCAAGAAGGTCGGCAGCTTCCTCCAGCCATCTC TCATCGGCTACGCCGCCGCCCGCGGCCTCGATCTCGTCAACATCGACCCATCGAAGCCCTTATCCGAACAGGGTCCTCTCGATTGCCTCATCCACAAGTT CTACGACGATGATTGGAAGCTCCAGCTCCAATCCTTCGCCGCCCAAAACCCTAACTCCCCGATCGTCGATCCCATCGATGCGGTCGAGAAGCTCCACAAC AGGGTCTCCATGCTCCAGGTCGTCAGCAACCTCAAGCTCGACTCTAATCGATCGGAGCGAGTGGACATCCCCAGACAGGTCGTCGTCGACTCCGATTCCG GCGGATCGAAGGCTACCCAAGGTTTGGTTAAGGAATTGGGGTTTCCTTTAATCGCCAAGCCTCTGCTGGCGAATGGATCCATTCTCTCCCACAAGATGTG TCTGATTTTCGATGGGGAAGGGCTGAAGGAGGTGGAAGGAACTCCGATCGTGCTACAGGAGTTTGTGAACCACGGCGGGGTCATTTTCAAAGTGTACGTC GCCGGGAACCATGTTCAGTGCGTAAAGAGGAAGTCTTTGCCTGACATTTCGGAGGAGAAATTGAAAACTCTGAAGGGCACTATGCCATTTGCTCAGGTCT CCAATCTCGCCGACGGTGGAGATGGTCACGGTGGCAGTGAATTCGCCGACGTGGAGATGCCTCCGGAAGGGTTTGCGGAAGAGGTTGGCCGTGGGTTGAA GGAAGGAATGGGGCTTAACTTGTTCAACTTTGATATGATTAGAGATGCAGGAGATGGGAATAGGTATCTGGTTATTGATATTAACTACTTCCCTGGGTAT GCTAAGATGCCTAATTACGAGGCGGTGTTGACGGATTTCATCTTGGAGCTCCTGCAACAGAAGAAAGGAGAGTGA
AA sequence Show only first row Show all	>Lus10039098 pacid=23150339 polypeptide=Lus10039098 locus=Lus10039098.g ID=Lus10039098.BGIv1.0 annot-version=v1.0 MEQFVGGMKHLCAAIANCCDADLYKQLRGLQDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDSKHNG VLGFEEFAHALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK NMTLQYLNRAMAKRYRVGFALASKKVGSFLQPSLIGYAAARGLDLVNIDPSKPLSEQGPLDCLIHKFYDDDWKLQLQSFAAQNPNSPIVDPIDAVEKLHN RVSMLQVVSNLKLDSNRSERVDIPRQVVVDSDSGGSKATQGLVKELGFPLIAKPLLANGSILSHKMCLIFDGEGLKEVEGTPIVLQEFVNHGGVIFKVYV AGNHVQCVKRKSLPDISEEKLKTLKGTMPFAQVSNLADGGDGHGGSEFADVEMPPEGFAEEVGRGLKEGMGLNLFNFDMIRDAGDGNRYLVIDINYFPGY AKMPNYEAVLTDFILELLQQKKGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10039098 [exp]	0	1
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10042902 [exp]	2.4	0.8093
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	4.9	0.8056
					Lus10043163 [exp]	5.5	0.7884
AT5G08200			peptidoglycan-binding LysM dom...		Lus10010198 [exp]	7.4	0.8052
AT4G33640			unknown protein		Lus10007087 [exp]	11.0	0.8150
AT2G32560			F-box family protein (.1)		Lus10036061 [exp]	12.0	0.7818
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001753 [exp]	12.5	0.7844
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10019750 [exp]	15.2	0.7005
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	15.9	0.7858
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	16.6	0.7728

Compare expression of checked genes

Lus10039098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.