Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47800 651 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G67900 438 / 8e-147 Phototropic-responsive NPH3 family protein (.1.2.3) AT2G14820 381 / 2e-124 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT4G37590 377 / 1e-123 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT4G31820 373 / 3e-122 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT2G23050 358 / 7e-118 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT3G26490 362 / 1e-117 Phototropic-responsive NPH3 family protein (.1) AT5G67440 356 / 1e-115 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT1G30440 303 / 5e-94 Phototropic-responsive NPH3 family protein (.1) AT5G03250 292 / 7e-91 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038763 [exp] 1048 / 0 AT5G47800 612 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 443 / 3e-148 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10014632 [exp] 395 / 4e-130 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 390 / 4e-128 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 386 / 2e-126 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 366 / 3e-119 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 363 / 3e-118 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 357 / 3e-111 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 308 / 3e-96 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G003700 [exp] 776 / 0 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.006G003000 [exp] 739 / 0 AT5G47800 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G186100 [exp] 471 / 1e-159 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.010G046800 [exp] 469 / 1e-158 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.001G295600 [exp] 403 / 3e-133 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 403 / 3e-133 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 392 / 5e-129 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 388 / 1e-127 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 381 / 8e-125 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 350 / 4e-112 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10039099 pacid=23150483 polypeptide=Lus10039099 locus=Lus10039099.g ID=Lus10039099.BGIv1.0 annot-version=v1.0 ATGAAGTTTATGAAACTGGGGAGTCAGCCAGATACCTTTTACACAGAAGAAGCTACGAGGTCTTTGGTATCAGATGTCCCAAGTGACCTTGTTATAAGAA TCAACGGGATTACATATCTGCTCCACAAGTTTGCACTTCTTCCAAAATGTGGGCTTTTACAACGACTGTGTTCCAATAGTCCTGAATCGAGCACTGTAAC AGTGGAGCTCCATGACATTCCAGGAGGGGAAGAGGCGTTTGAACTGTGTGCCAAGTACTGCTATGGAATCACAATCAGTCTCAGTGCACACAACATTGTG CCAGCATTCTGCGCTGCTAAATTCCTTCGCATGACTGAATCAGTCGATAATGGAAATCTCGTACTTAAACTCGAGGCATTCTTCAACTCGTGCATCCTTG AAAGCTGGAAGGATCCAATCCTCGCACTCCAGACGACAGTGAAGCTAACTGAATGGTCTGAAAATCTCGGTATCATCAGAAGATGCATCGACTCTATTGT AGATAAAATTCTCACGCCTCCGACAAAGGTCAGGTGGTCCTTCACTTATACAAGACCAGGGTTCAACAAACATGAGCAATCCGTCCCAAAAGATTGGTGG ACAGAAGATATAACAGACCTTGACATAGACCTCTTTAGGTGCATCATTACAGCTATCAAATCAACATATATGCTGCCTCCTCAGCTCATTGGAGAGGCTC TACATGTCTACGCTTATCGTCGGCTACCGGATGCTACGAAACTCAGGCCCCCGGATAAGACTGAGTCTTCTTCTCAAGCTAGACAAGTTTCAGACAAGGA AAGAAGAGTTCTTGAAACCATTGTGAGCATGATTCCTGTAGATAGGGGCTCAGTCTCTGCAGGCTTCTTGCTCAAGCTTCTCAACATCGCAAACTACTTG GCTGCATCTCCCGCGACAAAGGCAGAACTCATAAGACGGTCCAGTTTGCAGTTGGAGGAGGCAACTCTCGCGGATTTGCTCTTCCTTTCACATTCATCCT TGGATCAGCACCGTTACGATGTTGACTCAGTTGCAGCTATTCTGGAAAGTTTCTTGGTCCTGTGGAGACGTGTATCACAAGAACCTGTGGAAGAAAGCCA GATTGTGACATTAATTAGAAGGGTTGGTAAGCTTATTGATTCTTATCTTCAGGTGGTAGCAAAGGATCCAGACATGCCTGTTTCAAAGTTGGTATCTCTT GCTGAAGCTTTGCCAGACATCGGGAGGATTAATCACGACGACCTTTACAAGGCCATCAACAACTATTTGAAGGCAAGCTTTAAAGCTATTTCATTTCAAA GAGAACATCCTGATTTAAGCAAGGCAGAGAGGAAGCAGCTGTGCAGGATGCTAGACTGCCAGAAACTGTCCCAGGAAGTTCGAGCACACGCTGTCAAGAA CGAAAGGCTGCCGCTAAGAACAGTCGTTCAAGTTCTATTCTTTGACCAGGATACAGCAAACAGCAGAACTCTGTCTCAGCAACTGTCGTTCAAAGGAAAG CAGCCATCAGCAATGGCTGCTGCTGATGATCTAAGCAAGCTACATGTGGTTTCGAACGGTCAACCGAGTAGAGTCGAAGGGATGAAAAGGAGTTCAACGC CAGAGAGTAGCACCACAAGAAGTCATCAGCATGAACGAGTGAGAAAACCTGATAGAGTGCTCAAGGAGGAAAAGAAGTTGGTGAGAGGAGAAATAGAGGA AGGAGGAGGGAGTTCTGGTTCTGGCTCTGGCTCTGGTTCTGGAAGCAAGTTGGAGACAAGGAAGGTAATAGGAAGCAGAAGTACTACTGTTTCAGACCAT GGAAGGGATAAAGCTAAGGATCGATAG
AA sequence Show only first row Show all	>Lus10039099 pacid=23150483 polypeptide=Lus10039099 locus=Lus10039099.g ID=Lus10039099.BGIv1.0 annot-version=v1.0 MKFMKLGSQPDTFYTEEATRSLVSDVPSDLVIRINGITYLLHKFALLPKCGLLQRLCSNSPESSTVTVELHDIPGGEEAFELCAKYCYGITISLSAHNIV PAFCAAKFLRMTESVDNGNLVLKLEAFFNSCILESWKDPILALQTTVKLTEWSENLGIIRRCIDSIVDKILTPPTKVRWSFTYTRPGFNKHEQSVPKDWW TEDITDLDIDLFRCIITAIKSTYMLPPQLIGEALHVYAYRRLPDATKLRPPDKTESSSQARQVSDKERRVLETIVSMIPVDRGSVSAGFLLKLLNIANYL AASPATKAELIRRSSLQLEEATLADLLFLSHSSLDQHRYDVDSVAAILESFLVLWRRVSQEPVEESQIVTLIRRVGKLIDSYLQVVAKDPDMPVSKLVSL AEALPDIGRINHDDLYKAINNYLKASFKAISFQREHPDLSKAERKQLCRMLDCQKLSQEVRAHAVKNERLPLRTVVQVLFFDQDTANSRTLSQQLSFKGK QPSAMAAADDLSKLHVVSNGQPSRVEGMKRSSTPESSTTRSHQHERVRKPDRVLKEEKKLVRGEIEEGGGSSGSGSGSGSGSKLETRKVIGSRSTTVSDH GRDKAKDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10039099 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Lus10035356 [exp]	1.0	0.8901
					Lus10026092 [exp]	3.7	0.8885
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	9.8	0.8575
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	9.9	0.8314
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	10.0	0.8601
AT1G22060			unknown protein		Lus10037927 [exp]	10.7	0.8648
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026112 [exp]	12.0	0.8394
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	12.5	0.8618
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	15.7	0.8558
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10004179 [exp]	16.2	0.8180

Compare expression of checked genes

Lus10039099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.