Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15120 123 / 6e-36 Ubiquinol-cytochrome C reductase hinge protein (.1.2) AT1G07210 123 / 9e-34 Ribosomal protein S18 (.1) AT2G01090 117 / 1e-33 Ubiquinol-cytochrome C reductase hinge protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038756 [exp] 329 / 2e-114 AT1G07210 159 / 5e-48 Ribosomal protein S18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G170500 [exp] 139 / 1e-39 AT1G07210 174 / 1e-53 Ribosomal protein S18 (.1) Potri.002G069301 [exp] 127 / 1e-37 AT1G15120 125 / 1e-39 Ubiquinol-cytochrome C reductase hinge protein (.1.2) Potri.002G069200 [exp] 127 / 2e-37 AT1G15120 129 / 2e-41 Ubiquinol-cytochrome C reductase hinge protein (.1.2) Potri.005G190901 [exp] 123 / 4e-36 AT1G15120 121 / 3e-38 Ubiquinol-cytochrome C reductase hinge protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01084 [flax] [poplar] Ribosomal_S18 Ribosomal protein S18 CL0123 [flax] [poplar] PF02320 [flax] [poplar] UCR_hinge Ubiquinol-cytochrome C reductase hinge protein
Representative CDS sequence Show only first row Show all	>Lus10039100 pacid=23150287 polypeptide=Lus10039100 locus=Lus10039100.g ID=Lus10039100.BGIv1.0 annot-version=v1.0 ATGAGAGCTTTCGGTCCTCTGTTGCGATCCGCCGTCAACAATGGCTTCATTCGTCGGCTGGAGCCTTCCTTAGCTGCCAAATCTCTCTCCACGAATGCTC AATCCGTTGCGACTAATTCTTTCGAGCCTGACGATTTCGAGCGGCGGATCTTCGGCGATGTCCCTGATGGAGGTGGCTCCAACAGTTTCCTCCGGAATCT CGGTAAAGCGCAGAGGGCACGGAATCAATTTTCATCGGCGCCGAAAGGAGGAGGAGACGGTCAGTTCGATACCGGCCACGCTGGAAATTACAACACGCTT CAAGATGGGATGGATCAGAAGTTGAAGAACGCCGCCGCGTATTTCAAGTTTGATACTGAGGATACTGTCAAACAGGATGGTGGGTTCAGGCCGGACAAGA GTTTCTTCCCCACCATAAATAATAATTTCAAGAATGTTAGATTCCTTGCGAACTTCTTAACCGAGGCTGGAATTATTGTCAAGAGGAGTAAGACTGGTAT AAGTGCCAAAGCACAGAGGAAAATCGCGAGGGAGATAAAAACAGCTCGAGCTTTTGGACTGCTGCCTTTCACGACGATGGGGACAAAACAGGCTGACGAG GAACCCGTTGATCAGAAGAAGTATTTGGAAGAGACTTGCAAACCAAAGTGTGTAAAACCTTTACTCGAGTATGGGGCATGCGTGAAGAGAATCGAAGGTG ATGACACTGGCCACAAGCATTGCACAGGCCAATACTTTGACTACTGGTTCTGCGTTGACAAATGCGTAAGTGACAGATGCTATGTCATTCTCAGAGTTCC ATATTCCAGTTCTGCTCTCGCATTCTAA
AA sequence Show only first row Show all	>Lus10039100 pacid=23150287 polypeptide=Lus10039100 locus=Lus10039100.g ID=Lus10039100.BGIv1.0 annot-version=v1.0 MRAFGPLLRSAVNNGFIRRLEPSLAAKSLSTNAQSVATNSFEPDDFERRIFGDVPDGGGSNSFLRNLGKAQRARNQFSSAPKGGGDGQFDTGHAGNYNTL QDGMDQKLKNAAAYFKFDTEDTVKQDGGFRPDKSFFPTINNNFKNVRFLANFLTEAGIIVKRSKTGISAKAQRKIAREIKTARAFGLLPFTTMGTKQADE EPVDQKKYLEETCKPKCVKPLLEYGACVKRIEGDDTGHKHCTGQYFDYWFCVDKCVSDRCYVILRVPYSSSALAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07210			Ribosomal protein S18 (.1)		Lus10039100 [exp]	0	1
AT4G26055			unknown protein		Lus10001708 [exp]	2.8	0.6766
					Lus10042733 [exp]	3.9	0.6772
AT1G67785			unknown protein		Lus10018082 [exp]	12.0	0.6468
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10039077 [exp]	12.7	0.6673
AT5G61310			Cytochrome c oxidase subunit V...		Lus10040012 [exp]	14.5	0.6684
AT2G25830			YebC-related (.1)		Lus10038722 [exp]	15.5	0.6620
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10005043 [exp]	22.4	0.6699
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Lus10005796 [exp]	22.8	0.6711
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10024942 [exp]	23.8	0.6683
AT3G14080			Small nuclear ribonucleoprotei...		Lus10013161 [exp]	29.0	0.6375

Compare expression of checked genes

Lus10039100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.