Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52220 240 / 4e-80 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038762 [exp] 312 / 1e-108 AT3G52220 283 / 6e-97 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G240300 [exp] 262 / 5e-89 AT3G52220 234 / 4e-78 unknown protein Potri.008G019100 [exp] 248 / 1e-83 AT3G52220 232 / 4e-77 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10159 [flax] [poplar] MMtag Multiple myeloma tumor-associated
Representative CDS sequence Show only first row Show all	>Lus10039101 pacid=23150543 polypeptide=Lus10039101 locus=Lus10039101.g ID=Lus10039101.BGIv1.0 annot-version=v1.0 ATGTATCATCCGACCCGAGGCGGCGTTCGCGGTGGCCGAGATCAGTTTACTTGGGATGAAGTCAAGGTTGATAAATACCGTGAAAATTATATTGGTCACA GTCTCAAGGCACCTGTTGGGAGATGGCAGAAAGGGAAAGATCTACATTGGTACACCAGGGACAAAAAATCTGGTACTTCGGATGATGCTCTCAAGGATGA GATTAAAAGGATCAAGGAAGAGGAGGAACAAGCCATGAGGGAGGCCCTTGGCTTAGCACCAAAACGTTCTTCCCGGCCACAAGGAAACAGGCTTGATAAG CACGAGTTTAATGAACTGGTGAAGCGCGGATCAACAGCAGAGGACTTGGGAGCCGGGCATGCTGATGCAGCACGTGTCGATGGGCTTGGCTTCTCGAAGG CGCCCCGTCCTTGGGAAGACCCATCAACCCTTCCATCTTCAGCAACAGAGGTATTGCCTGAGCTGCCGAAGGTCAACGATATCCCTAATCCGCCGGTGGA GAATCGCGAAGAAGACGAGTCGAGGGATGAAGCCAGCCGGAAGGAGAGAAGGCACGAGGAGAAGCAGCAAGAAAAGGAGAAGAAAAGGGAGAAGAAGGAG AAGCATAAAAGGCATGAGAAGAGGCATTCCCGTGACTCGGACGACAAGAGGAAACACAGGGATGACAACAAGGAGAGGAAGAAGAGAAGAAGACACGATT CCGATGACGAGTGA
AA sequence Show only first row Show all	>Lus10039101 pacid=23150543 polypeptide=Lus10039101 locus=Lus10039101.g ID=Lus10039101.BGIv1.0 annot-version=v1.0 MYHPTRGGVRGGRDQFTWDEVKVDKYRENYIGHSLKAPVGRWQKGKDLHWYTRDKKSGTSDDALKDEIKRIKEEEEQAMREALGLAPKRSSRPQGNRLDK HEFNELVKRGSTAEDLGAGHADAARVDGLGFSKAPRPWEDPSTLPSSATEVLPELPKVNDIPNPPVENREEDESRDEASRKERRHEEKQQEKEKKREKKE KHKRHEKRHSRDSDDKRKHRDDNKERKKRRRHDSDDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52220			unknown protein		Lus10039101 [exp]	0	1
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	1.4	0.9453
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	1.7	0.9483
AT1G64385			unknown protein		Lus10032376 [exp]	5.3	0.9231
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10015524 [exp]	5.3	0.9321
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10039381 [exp]	5.5	0.9322
AT3G11810			unknown protein		Lus10037134 [exp]	6.0	0.9259
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	6.7	0.9424
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	6.9	0.9339
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10010838 [exp]	8.0	0.9197
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	8.5	0.9305

Compare expression of checked genes

Lus10039101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.