Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47760 497 / 1e-179 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase 2 (.1) AT5G36700 408 / 3e-143 ATPGLP1, 2-PHOSPHOGLYCOLATEPHOSPHATASE1 2-phosphoglycolate phosphatase 1 (.1.2.3.4) AT5G36790 408 / 3e-143 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038761 [exp] 556 / 0 AT5G47760 439 / 4e-157 2-phosphoglycolate phosphatase 2 (.1) Lus10026241 [exp] 413 / 5e-146 AT5G36700 536 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Lus10042429 [exp] 412 / 1e-144 AT5G36700 541 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Lus10033024 [exp] 360 / 1e-126 AT5G47760 288 / 1e-98 2-phosphoglycolate phosphatase 2 (.1) Lus10038760 [exp] 353 / 6e-124 AT5G47760 305 / 1e-105 2-phosphoglycolate phosphatase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G004200 [exp] 515 / 0 AT5G47760 516 / 0.0 2-phosphoglycolate phosphatase 2 (.1) Potri.008G077400 [exp] 418 / 4e-147 AT5G36700 508 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Potri.010G180400 [exp] 416 / 3e-146 AT5G36700 514 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4) Potri.006G003501 [exp] 92 / 2e-23 AT5G47760 96 / 9e-26 2-phosphoglycolate phosphatase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039102 pacid=23150480 polypeptide=Lus10039102 locus=Lus10039102.g ID=Lus10039102.BGIv1.0 annot-version=v1.0 ATGAGCTCACCAGCACCATCAACAGCGATTCAGCTACTCAATCCTGATACTGCTCAATCTCTCGTCGACTCCGTTGAAGCTTTCCTCTTTGATTGCGATG GCGTGATCTGGAAGGGAGACAAGCTCATCGACGGCGTCTCTCAAACTCTTGATTTGCTCCGCTCCAAGGGGAAAAAGCTGGTTTTCGTCACCAACAATTC CACCAAGTCCAGACGCCAATACGCCGCCAAATTCCATTCTCTTGGCATTTCAGTCAGCGAGGATGAGATTTTCTCCTCCTCTTTCGCTGCGGCAATGTAC TTGAAAGTCAATGAATTCCCACCGGAGAAGAAGGTATACGTGATTGGAATGGAAGGAATAGTCCAGGAATTGCAGCAAGCTGGTTTTACAGCTCTGGGAG GTCCGGAAGATGCAGGGAAAAGAGCAGAATGGAAATCAAATACTCTCTTCGAACACGATAAAACTGTTGGAGCAGTTGTTGTGGGATTAGATCCCTTTGT CAACTACCACAAGCTTCAATATGGAACCCTCTGCGTACGTGAGAATCCGGGTTGCCTTTTCATCGCAACCAACCGCGATGCAGTTGGTCACATGACTGAT CTTCAAGAGTGGCCTGGTGCTGGGTGTATGGTAGCTGCACTGCGTGGTTCAACTGAAAGAGAGCCTATTGTAGTTGGAAAACCATCCACCTTTATGATGG ACTTCCTATTACAGAAGTTCAACATCAGTACGTCGAAAATGTGTATGGTTGGAGATCGACTGGACACTGATATCCTATTTGGACAAAGCTCTGGTTGCAA AACTCTTCTTGTTCTCTCAGGTGTAACAACTGAATCCGCTCTGCACGACCCAGCAAACCAGATCAAACCAGATTATTACACCACTCAAGTTTCCGACTTG ATTGGGTTGCTTGGATCATAA
AA sequence Show only first row Show all	>Lus10039102 pacid=23150480 polypeptide=Lus10039102 locus=Lus10039102.g ID=Lus10039102.BGIv1.0 annot-version=v1.0 MSSPAPSTAIQLLNPDTAQSLVDSVEAFLFDCDGVIWKGDKLIDGVSQTLDLLRSKGKKLVFVTNNSTKSRRQYAAKFHSLGISVSEDEIFSSSFAAAMY LKVNEFPPEKKVYVIGMEGIVQELQQAGFTALGGPEDAGKRAEWKSNTLFEHDKTVGAVVVGLDPFVNYHKLQYGTLCVRENPGCLFIATNRDAVGHMTD LQEWPGAGCMVAALRGSTEREPIVVGKPSTFMMDFLLQKFNISTSKMCMVGDRLDTDILFGQSSGCKTLLVLSGVTTESALHDPANQIKPDYYTTQVSDL IGLLGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	0	1
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Lus10005683 [exp]	1.4	0.7432
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10020193 [exp]	2.4	0.7206
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	4.2	0.7230
AT3G01720			unknown protein		Lus10014878 [exp]	6.3	0.6891
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10000200 [exp]	9.9	0.6446
AT2G38840			Guanylate-binding family prote...		Lus10014720 [exp]	13.4	0.6501
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	14.1	0.6700
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	17.5	0.6545
AT3G07140			GPI transamidase component Gpi...		Lus10038183 [exp]	18.5	0.6637
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10017617 [exp]	21.2	0.6339

Compare expression of checked genes

Lus10039102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.