Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13190 250 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55670 145 / 2e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G21660 52 / 2e-07 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT4G39260 49 / 3e-07 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT2G43370 53 / 4e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71800 52 / 9e-07 CSTF64 cleavage stimulating factor 64 (.1) AT4G13850 49 / 9e-07 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT5G04600 50 / 1e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G08000 49 / 1e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 47 / 3e-06 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038759 [exp] 659 / 0 AT1G13190 378 / 1e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10019147 [exp] 538 / 0 AT1G13190 418 / 3e-139 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038757 [exp] 313 / 5e-102 AT5G55670 148 / 4e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038758 [exp] 252 / 1e-79 AT5G55670 75 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10015146 [exp] 52 / 1e-07 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031534 [exp] 52 / 1e-07 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028714 [exp] 55 / 2e-07 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10014814 [exp] 54 / 2e-07 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 54 / 3e-07 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182500 [exp] 363 / 2e-115 AT1G13190 224 / 3e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G051600 [exp] 358 / 2e-113 AT1G13190 198 / 2e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G061200 [exp] 54 / 3e-07 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.004G155300 [exp] 50 / 1e-06 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.006G208500 [exp] 49 / 1e-06 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G157300 [exp] 48 / 2e-06 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G319900 [exp] 48 / 2e-06 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.009G116400 [exp] 49 / 3e-06 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.017G059000 [exp] 47 / 4e-06 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.009G160300 [exp] 46 / 6e-06 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10039103 pacid=23150256 polypeptide=Lus10039103 locus=Lus10039103.g ID=Lus10039103.BGIv1.0 annot-version=v1.0 ATGGTGATCAAATTCAGCCGCCGTAGAAGCAACCTACTTTCCTCCGCAACCCTTGCGATCCTCGTCGCTGCCGTATTGGTTCTATGCTTCATGTCCACAT CCGCGGCGGCCCAGAGAGCCCGCGGCGGAGGACGGAGCGGTAGCCGCCCCGTTGTTGGGGGAGCGGTGGTTGGCGGGGCGGTAGGCGCCAGCGGCGGCTC AAGGGTTCGAAACAGGGCGGGGCCGGCGGCAGCCCCGTCTTCCGCCGTTGGGGTGTCAGGACACTATTTTGGTGGGCTTGGTCAATTGCTGGGAGCGTGT TCCTTGCTCCTCACCTTGCTTGTAACGCTGTTCCAGGAGTTGACGTTGAATCAAATTTCTGCGATTGTGTGCGGCTTCTCTGTGCCTCCTGATTTTCGTC TAATGGCTGATGAGCAAATTGAATTTGAGGATGAGGAATATGGAGGTGCCCAGAAGTTACAGTACCAAGGGAATGGTACCATTCCTGCTCTTGCAGATGA AGAGATGGGCGAAGATGATGAGTATGATGATCTTTATAATGATGTGAATGTTGGTGAGAATTTCCTACAAATGCATCGATCTGATCCGCCGGCCCAACCT GCTAAACCGAGTAACGGTACATTCCAAACTCAGAATGCTCCCGCATCAAGAGGTGAATCGGCTACTGGTGTTGGTGCTGGTTCACAAGGGGTACATATTC CCCCAGTTGCTGCCGAAGGGAAGTATTCTAATCCTGCAGCACATTTCCAAGAGAAAAAGGAGGTTCTTGGGATAGTCAAAGGACCAGAAACGGGTCCAAT TGGTTATCCAGATGGTTCTGCTTCACAAAAAGGAAAGGTTATGGATACGGCACATGATACTGCAGTTGGAAATATGGGGTTCCGAGGAGCATCATCAATA CCATCCAATATTGCAGTTAACCCGCCTGATATGCCTAGAAAAGTTCCCATTGAGCTTTCATCTATGCCAAGTACAGTAGCAGGTGGAGTTCCGCAGATGC CTGCTAATCAAATGAACATAAATATGGATGCAAATATCATGAATGAAAATCAGATAAGGCCTCCTATAGAGAATGGTCCAAATATGCTGTTTGTTGGAGA ATTGCATTGGTGGACAACGGATGCAGAGATTGAGGGTGTTTGTTCTCAATATGGAAGAGTGAAGGAAATTAAGTTCTTTGATGAAAGAGCAAGTGGTAAG TCCAAAGGTTATTGCCAAGTTGAATTTTATGACGCAAATTCTGCAGCCTCTTGCAAAGAGGGAATGCATGGGTTTATGTTTAACGGCCGAGCTTGTATTG TGGCATTTGCTTCTCCACAATCGATAAAGCAAATGGCAGCATCTTACACAAATAAAAATCAAAATCAGCCTCAGCTACAAACACAAGGTAGGAGACCGAT GACTGATGGTGCTGGGAGAGGTGGCGCTGTGAATTATCCAGCTGGAGATGGTGGGAGGAACTTTGGAAGGGGTGGTGGTTGGGGACGCGGTGCACCTGGT GTTCTGAACAAAGGTCCTGGGGTTGGAGGACCAATTAGAGGAAGAGGAGGCATGGGTGCTAAGAATATGATGGGGGGTGCTGTTGGCGTTGGAGGTGGCA TGAATGGGGGAGGTTATGGACAGGGCTTTGGTGGTCCGGCATTTGGTGGTCCTGCTGCTGGAATGATGCCTCCACATGCGATGATGGGAGCTGGATTTGA TGCATACATGGGTAGAGGGGCTGGTTATGGAGGATTTGGAGGAGTTCCTGGATTTCCGGGCATGCTTCCTTCTTTTCCTTCTGTTAATACAATGGGACTT GCTGGTGTGGCGCCTCATGTCAACCCGGCATTCTTCGGCCGCGGAATGGCTCCAAATGCTATGGGTATGATGGGTGCCTCGGGAATGGAGGGGCCTGGCA TGGGAATGTGGTCTGAAACAAGCATGGGTGGATGGGGAGAAGAGCATGGAAGAAAGACAAGAGAATCAAGTTATGGTGCTGAAGATGGCGCGTCTGACTA TGGTTATGGAGAGGGAAGTCAAGAAAAGGGTGGACGTTCAAGTGCTGCTCCCCGTGAAAAAGAAAGGTCTTCTGGACGTGAACTGTCAGGGACCTCCGAT AGGAGGCATCGTGATGAGAGGGAGCCGGACTATGACAGATCAGAACGAGATCACAGGGAGCCTCGTTATAGGGAGGAAAAAGATAGTCATAGAGATCACA GGAAGAAAGAACGTGACTCAGGCTATGAGGATGATTGGGACAGGGGCCAGTCTTCCTCGAGGCAACAAAGTAGGTCTCGTGCTATGCCAGAAGAAGCTCA CAGGTCAAGGTCAAGGTCAAGGGATGTGGATTATGGCAAGAGGAGACGTCTGCCATCAGAGTGA
AA sequence Show only first row Show all	>Lus10039103 pacid=23150256 polypeptide=Lus10039103 locus=Lus10039103.g ID=Lus10039103.BGIv1.0 annot-version=v1.0 MVIKFSRRRSNLLSSATLAILVAAVLVLCFMSTSAAAQRARGGGRSGSRPVVGGAVVGGAVGASGGSRVRNRAGPAAAPSSAVGVSGHYFGGLGQLLGAC SLLLTLLVTLFQELTLNQISAIVCGFSVPPDFRLMADEQIEFEDEEYGGAQKLQYQGNGTIPALADEEMGEDDEYDDLYNDVNVGENFLQMHRSDPPAQP AKPSNGTFQTQNAPASRGESATGVGAGSQGVHIPPVAAEGKYSNPAAHFQEKKEVLGIVKGPETGPIGYPDGSASQKGKVMDTAHDTAVGNMGFRGASSI PSNIAVNPPDMPRKVPIELSSMPSTVAGGVPQMPANQMNINMDANIMNENQIRPPIENGPNMLFVGELHWWTTDAEIEGVCSQYGRVKEIKFFDERASGK SKGYCQVEFYDANSAASCKEGMHGFMFNGRACIVAFASPQSIKQMAASYTNKNQNQPQLQTQGRRPMTDGAGRGGAVNYPAGDGGRNFGRGGGWGRGAPG VLNKGPGVGGPIRGRGGMGAKNMMGGAVGVGGGMNGGGYGQGFGGPAFGGPAAGMMPPHAMMGAGFDAYMGRGAGYGGFGGVPGFPGMLPSFPSVNTMGL AGVAPHVNPAFFGRGMAPNAMGMMGASGMEGPGMGMWSETSMGGWGEEHGRKTRESSYGAEDGASDYGYGEGSQEKGGRSSAAPREKERSSGRELSGTSD RRHRDEREPDYDRSERDHREPRYREEKDSHRDHRKKERDSGYEDDWDRGQSSSRQQSRSRAMPEEAHRSRSRSRDVDYGKRRRLPSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10039103 [exp]	0	1
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	3.0	0.9357
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	4.7	0.9082
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	5.3	0.9215
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	6.9	0.9000
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10042820 [exp]	14.8	0.8555
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	16.9	0.9234
AT1G65800		ARK2	receptor kinase 2 (.1)		Lus10007602 [exp]	17.7	0.8951
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	18.7	0.9213
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031473 [exp]	24.4	0.8917
AT5G03450			Transducin/WD40 repeat-like su...		Lus10042191 [exp]	29.6	0.8723

Compare expression of checked genes

Lus10039103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.