Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47750 743 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 693 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 679 / 0 D6PK D6 protein kinase (.1) AT2G44830 595 / 0 Protein kinase superfamily protein (.1) AT3G27580 587 / 0 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G40030 558 / 0 Protein kinase superfamily protein (.1) AT1G79250 546 / 0 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 536 / 0 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 528 / 0 RSH3 root hair specific 3 (.1) AT3G52890 529 / 2e-178 KIPK KCBP-interacting protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038753 [exp] 1015 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 718 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 640 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10022534 [exp] 639 / 0 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 623 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 576 / 0 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 573 / 0 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10035591 [exp] 538 / 0 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 529 / 0 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G004900 [exp] 810 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 793 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 666 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.014G047500 [exp] 640 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 636 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 585 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 561 / 0 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 557 / 0 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G114900 [exp] 556 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.008G080600 [exp] 553 / 0 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10039105 pacid=23150379 polypeptide=Lus10039105 locus=Lus10039105.g ID=Lus10039105.BGIv1.0 annot-version=v1.0 ATGGCCTCAAGAACAGGCAGTAAATCTTTCCCCAAACAACAGCAGGAGGGAGCCAGTGTTCATAAGTTGAGGCTAGATGATCTCAAGCTTGTGTCTCCGA AATCTGAGATGAGTAGTCATGGGCCGCAAGTGGCAAGGCCATTAGGAAACACACCAAAGCAAGCTACTACAGTCGAAGTCTCTGATAAGAAGAATAAGTT CCCAAACTCGAACAGAAAGGTGACTGCTGACTCTTTGAGTAGTAAATTGGAATCCGCCGCCTCATCCTTGGATACGAGAGGTTCACAGGAGGGCGTTGTC TTCGATCAAGAGAAGAAAGCATCGGAGCATGGAAGTGTTAAGAACAGTTTGGTGTATGTCGAGAGTGGGAAGAGTAGCATGTGTAGAGGGAGCACTAGCA CTGATATCAGCGACGAGAGCTCGTGTAGCAGCTTCAGTAGCAGTATCAGCAAACCTCACAAGGCGAATGATTTGAGGTGGGAAGCCATTCAAGCTGTCAG GATGAGAGATGGGGTTTTGGGGTTGAATCATTTCAGATTGCTGAAGAGGCTAGGTTGTGGCGACATTGGGAGCGTGTATCTGTCCGAGTTAAGTGGAACC AAGTGTTATTTCGCAATGAAAGTCATGGACAAAGGCTCTCTTGCGAGTCGTAAGAAGCTGCTTAGAGCTCAGACTGAAAGGGAGATACTACAGTCTCTGG ATCATCCTTTCCTTCCTACTCTTTATACCCACTTCGACACCGAAAAGTTCTCTTGTTTGGTCATGGAGTTCTGCCCTGGAGGTGACTTGCACACTCTCAG GCAGAGGCAGCCAGGGAAGCATTTCACCGAACAAGCCGTAAAGTTCTATGTGGCTGAGGTCTTATTAGCTATGGAGTATCTCCACATGCTTGGAATCATC TACCGGGATCTGAAGCCGGAGAATGTACTAGTCAGAGAGGATGGACACATAATGCTTTCCGACTTTGACCTTTCCCTTCGTTGCGCTGTCAGCCCAACGC TCGTCAAATCCTCGTCCATCATCGACGCAGATCATCCATCTCAAAAGAATCCAACTTACTGCGCCCAACCAGCTTGTATTCAGCCACCTTCCTGCATTCA ACCGTCCTGTGTAGCTCCAACAACATGCTTCTCGCCGCGCCTCTTCTCTAGCAAGTCCAAAAGGGAGAAGAAATCCAAGAATGATGTAGGGAACCAAGTG AGACCTTTACCCGAACTCATGGCAGAGCCAACCGAGGCAAGATCAATGTCATTTGTTGGTACTCACGAGTATTTGGCTCCTGAGATCATCAAAGGTGAAG GCCACGGCAGTGCTGTAGATTGGTGGACGTTCGGGATCTTTCTGTATGAACTCTTGTACGGTAAAACTCCCTTCAAAGGATCCGGAAACCGTGCCACATT GTTCAACGTCGTTGGGCAGCCTCTTCGGTTCCCAGAATCACCAGTTGTCAGCTTTGCAGCAAGGGACCTGATAAGGGGCCTTCTTGTGAAAGAACCACAG AACAGATTGGCGTACAAGAGAGGAGCCACCGAGGTAAAGCAGCATCCTTTCTTCGAAGGCGTGAACTGGGCGTTGATTCGTTGTGCTACTCCGCCTGATA TACCCAAACCGGTCGAGATTGAGCGCATCCCTGGACCCCCACCGCCTTCCACAAATGGGAAAGCTGGTGGAGTTGTTGCTGTTGCTAATGCTGGTGGTGG TGGTGGACCTGGTCAAAAGGGTTGTTCTGACAATTATCTTGAGTTTGATTTCTTCTAG
AA sequence Show only first row Show all	>Lus10039105 pacid=23150379 polypeptide=Lus10039105 locus=Lus10039105.g ID=Lus10039105.BGIv1.0 annot-version=v1.0 MASRTGSKSFPKQQQEGASVHKLRLDDLKLVSPKSEMSSHGPQVARPLGNTPKQATTVEVSDKKNKFPNSNRKVTADSLSSKLESAASSLDTRGSQEGVV FDQEKKASEHGSVKNSLVYVESGKSSMCRGSTSTDISDESSCSSFSSSISKPHKANDLRWEAIQAVRMRDGVLGLNHFRLLKRLGCGDIGSVYLSELSGT KCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFDTEKFSCLVMEFCPGGDLHTLRQRQPGKHFTEQAVKFYVAEVLLAMEYLHMLGII YRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSSIIDADHPSQKNPTYCAQPACIQPPSCIQPSCVAPTTCFSPRLFSSKSKREKKSKNDVGNQV RPLPELMAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLYGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQ NRLAYKRGATEVKQHPFFEGVNWALIRCATPPDIPKPVEIERIPGPPPPSTNGKAGGVVAVANAGGGGGPGQKGCSDNYLEFDFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10039105 [exp]	0	1
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	1.4	0.8892
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	1.4	0.8552
AT5G60050			BTB/POZ domain-containing prot...		Lus10038475 [exp]	7.9	0.7864
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	11.2	0.8466
AT3G60680			Plant protein of unknown funct...		Lus10009284 [exp]	11.7	0.7227
AT4G19006			Proteasome component (PCI) dom...		Lus10010423 [exp]	12.6	0.8142
AT3G57880			Calcium-dependent lipid-bindin...		Lus10012026 [exp]	19.0	0.7890
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	19.9	0.7735
AT3G03570			Protein of unknown function (D...		Lus10020328 [exp]	20.7	0.8093
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	20.8	0.8307

Compare expression of checked genes

Lus10039105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.