Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47730 455 / 9e-162 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G55840 421 / 3e-148 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39180 98 / 2e-22 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 96 / 9e-22 ATSFH3 SEC14-like 3 (.1.2.3) AT3G24840 94 / 4e-21 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G18180 91 / 5e-20 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G34580 91 / 5e-20 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G47510 89 / 1e-19 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 89 / 3e-19 ATSFH12 SEC14-like 12 (.1) AT2G16380 86 / 2e-18 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038752 [exp] 615 / 0 AT5G47730 489 / 4e-175 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10043160 [exp] 402 / 1e-137 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10032587 [exp] 391 / 5e-137 AT1G55840 407 / 2e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016628 [exp] 372 / 9e-129 AT1G55840 415 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10022533 [exp] 323 / 2e-111 AT1G55840 365 / 8e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10028938 [exp] 99 / 5e-23 AT5G47510 422 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 100 / 6e-23 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041779 [exp] 97 / 4e-22 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10007464 [exp] 97 / 4e-22 AT5G47510 421 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004000 [exp] 515 / 0 AT5G47730 497 / 3e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.016G005100 [exp] 484 / 5e-173 AT5G47730 501 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G369400 [exp] 453 / 6e-161 AT1G55840 466 / 4e-166 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G076200 [exp] 94 / 4e-21 AT5G47510 397 / 1e-136 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G119700 [exp] 94 / 6e-21 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 92 / 4e-20 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.001G158700 [exp] 91 / 6e-20 AT5G47510 421 / 2e-145 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G230500 [exp] 89 / 3e-19 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G243000 [exp] 88 / 7e-19 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.002G032600 [exp] 87 / 2e-18 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10039106 pacid=23150498 polypeptide=Lus10039106 locus=Lus10039106.g ID=Lus10039106.BGIv1.0 annot-version=v1.0 ATGGGATGGCATGCAGTTGATGAGCCATTGAAGCGGACTTACCAGAATGTCCATCAAGGATATCAAGTGGAAACTCTTGCACGGTTTTTACGAGCTAGAG ACTGGAATGTTCCGAAAGCTCATAAAATGCTAATCGACAGTCTGCACTGGAGAGTTCAGAACGAGATTGACAGTATATTAGCAAAACCCATAGTTCCAGC TGATCTCTACAGAGCAGTCCGTGACTCACAGCTTATCGGAATGTCAGGTTACTCAAGAGAGGGACTACCTGTCTTTGCTATTGGGGTTGGACTCAGCACA TTTGACAAGGCCTCTGCTACTTATGACTTCCCCCCAATGCAGGTTCACTACTATGTTCAATCTCACATTCAGCTGAATGAATATCGGGATCGTGTAATTT TGCCATCTGCGTCGAAAAAGTATGGTCGACCCATAACTACATGCATAAAGGTCTTGGATATGACAGGCTTGAAGCTTTCTGCACTGAATCAAATAAAGTT GATGACTGTCATTTCGACGGTGGATGACTTGAATTATCCCGAGGAGAAGAATACTTATTATATTGTAAATGCACCTTACATATTCTCGGCTTGCTGGAAG GTAGTGAAGCCTTTACTGCAAGAAAGAACTAGGAAGAAAGTGCAAGTTTTGAGTGGTAATGGAAGAGAAGAACTCTTAAAGATAATGGATATCTCATCAC TCCCACATTTCTGCAAAAGGGAAGGCTCTGGATCATCCAAGCACTCGGACAAAAGTGAGAGTTGCTATTCGCTGGACCATCCGTTCCACCAACATCTCTA CAACCACATCAAACAGCAAGCATCAATTAATGCAAGCACTGCACTGCTAAAGCAAGGATCTTTCCATGTGAATGTCCCCGAGTCAGCTGCGGAAGGAACC GAGATAGCAAAGAACATCGAATCTGAGCTGCACAGGTTTCCTGAGAATGGGATTCCCAGAGGACTTTCTGGAATAAGTCTTGATGACCTCAAAATCAAAG ATGATTCGGAGTAG
AA sequence Show only first row Show all	>Lus10039106 pacid=23150498 polypeptide=Lus10039106 locus=Lus10039106.g ID=Lus10039106.BGIv1.0 annot-version=v1.0 MGWHAVDEPLKRTYQNVHQGYQVETLARFLRARDWNVPKAHKMLIDSLHWRVQNEIDSILAKPIVPADLYRAVRDSQLIGMSGYSREGLPVFAIGVGLST FDKASATYDFPPMQVHYYVQSHIQLNEYRDRVILPSASKKYGRPITTCIKVLDMTGLKLSALNQIKLMTVISTVDDLNYPEEKNTYYIVNAPYIFSACWK VVKPLLQERTRKKVQVLSGNGREELLKIMDISSLPHFCKREGSGSSKHSDKSESCYSLDHPFHQHLYNHIKQQASINASTALLKQGSFHVNVPESAAEGT EIAKNIESELHRFPENGIPRGLSGISLDDLKIKDDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47730			Sec14p-like phosphatidylinosit...		Lus10039106 [exp]	0	1
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	2.8	0.9202
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10004862 [exp]	4.7	0.9271
AT1G71696		SOL1.4, SOL1.3,...	SUPPRESSOR OF LLP1 1, carboxyp...		Lus10028694 [exp]	9.1	0.9380
AT5G46250			RNA-binding protein (.1.2.3)		Lus10023315 [exp]	9.4	0.9130
AT1G17100			SOUL heme-binding family prote...		Lus10013045 [exp]	26.3	0.9139
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10043044 [exp]	27.2	0.9180
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	27.3	0.9148
AT1G02820			Late embryogenesis abundant 3 ...		Lus10008169 [exp]	27.5	0.9059
AT2G28360			SIT4 phosphatase-associated fa...		Lus10016089 [exp]	31.7	0.9017
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10003076 [exp]	31.7	0.9080

Compare expression of checked genes

Lus10039106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.