Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12150 280 / 3e-87 Plant protein of unknown function (DUF827) (.1) AT5G55860 175 / 2e-47 Plant protein of unknown function (DUF827) (.1) AT4G17210 137 / 1e-34 Plant protein of unknown function (DUF827) (.1) AT2G26570 69 / 4e-12 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT4G33390 62 / 8e-10 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038751 [exp] 868 / 0 AT1G12150 354 / 5e-116 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 227 / 3e-66 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 226 / 2e-65 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 68 / 1e-11 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10035778 [exp] 64 / 3e-10 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10017614 [exp] 44 / 0.0005 AT1G66840 268 / 3e-81 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G005200 [exp] 370 / 3e-122 AT5G55860 208 / 2e-59 Plant protein of unknown function (DUF827) (.1) Potri.006G004100 [exp] 366 / 9e-121 AT1G12150 293 / 2e-92 Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 226 / 6e-66 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.014G029800 [exp] 55 / 1e-07 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 55 / 1e-07 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.017G118900 [exp] 50 / 3e-06 AT1G66840 305 / 5e-95 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.005G238500 [exp] 42 / 0.0006 AT1G75720 82 / 3e-19 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.002G023000 [exp] 41 / 0.0007 AT1G75720 108 / 2e-29 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10039107 pacid=23150697 polypeptide=Lus10039107 locus=Lus10039107.g ID=Lus10039107.BGIv1.0 annot-version=v1.0 ATGGTGAATATACGGACGATTAAGGTTGAAGGGAAAACTGGAGGAGGGGGAGGTGTAGGAGAGATTGGGGAGATTGACACTAGGGCTCCTTTCCAATCGG TGAAAGCTGCTGTTAGTTTGTTTGGAGAGGTTGCCATTTCCAAAAGCAGACCTTCGTTCAAGAAGACCAACTCTAGGCTTAATGCTTCAGAGAATGTGTT GGAAAAGGAGACACAACTGATGCTGAGCCGTAGGGAGTACGAGAAGTACAGGCACAAGCTCGAGAGTTCCGAGACAGCCAAAGCTCGTACCAATGCTGAG CTCGAGAGGGCCAAGAGGACCCTCGAGGACCTCAACACCAAGCTCAATTCCGTGATGAGGTCCAAGATGTCGGCCCTCGGAGCTGCTGAAGCTGTCAAGC AGCGAGCAAGGAAGCTCGAGGTCGCCAAGTCCCACAAGGACATGGGACAGTCCGAAAGGAGGATCGAGCTGCAAGAAGCCCGGGACAGGTACGCAGCCAC CTCCGAGGAGCTCAACACGGCCAAGCAACAGCTCAACAAGATCAGGCAAGATTTCGACGCCACTCTGGAGGCCAAATGGGCCGCATTCCAGCTCGCTGCT GAGGCTCAGCGATCGGCCAACATGAACACCGAGCGAGCTGGCGAGCTGACCAAGGAGATTCATGCCATGCGAGAATCGAGGCATCATTTGAAAGCTGCGT CCTTGGAAGCTCACGAACGCCAAGTTAAAGGCATGGCGGATAAAACTCGTTATGTCGAAGCCTACAAAGCTGCTAAACAAGAAGTTGAGGTGCATGTTCA GCAGTTGAGGAAAGAGTATGATCCGGAACTCGTCAGGGTTCTTGAAGAGAGGCTTGCAGAGACAACATCCGAGATTGAAGACTTGCAAGCGCAGATGAAA AGAGCGCACGCTGATGAAATGGATTCCGTGAAGGGGATAACGAGTGAATTGAACCAAGCAACGAGGACGCTCCAGGAGATTGCGGAGGAAGAGAGCTCCC TTCGTGTGAAAGTGAACAATATGAGGGTTGAGCTGGAGAATCTGAAGCTGGAGAAGGAACAATTGTTGGAGAAAGAAGCGCAAAGTTCGGAACTTGTTCA AGAAGAGGAAAGTTCAGAAGCAGCATTCAAGAAGCTGATTTCCGAAATGGAAGCTGTAATTAAGGACGCAGAAGATATGCAGAGGATGGCAAAGGAGGCG AATCAGGAGGCGGAGAATGCTAGACTGAGGACTCAACAAGCTGAGGAGAAGCTACTGCTTTCTACTGCAGAGATTGAAGTGGCAAAAGCAGCAGCACTGA GAGCCCATACAGAAATGAGAAAGCTGTCCGAAACGAAAGGCGACGATGTTCTTAGCGAGGAGCCTGGAAAGAGGATGAGGATTACATTGTTGGAATACGT TGCGCTGCAAAAGAAACTGTCTGAAAGTGCTGGAATAGCAGAAAGAACTGTGGCAGAGACCATGAATCAGTTGGAATTGGTTAAAGCAAAAATGAATGAA GAATCAAAGAAGTTGGAGGCGAACCTGAAAGCTATCGAGGAGATTAAGGAAGCCACCGAGCTAGCATTGCAGGGAGCCGATGCTGCAGAGACTGCACGTC GTGCTCTGGAAGCTGAACTGAAGAAGTTGCGAGATCAAGAAGGTTCTATGGGCACGTAA
AA sequence Show only first row Show all	>Lus10039107 pacid=23150697 polypeptide=Lus10039107 locus=Lus10039107.g ID=Lus10039107.BGIv1.0 annot-version=v1.0 MVNIRTIKVEGKTGGGGGVGEIGEIDTRAPFQSVKAAVSLFGEVAISKSRPSFKKTNSRLNASENVLEKETQLMLSRREYEKYRHKLESSETAKARTNAE LERAKRTLEDLNTKLNSVMRSKMSALGAAEAVKQRARKLEVAKSHKDMGQSERRIELQEARDRYAATSEELNTAKQQLNKIRQDFDATLEAKWAAFQLAA EAQRSANMNTERAGELTKEIHAMRESRHHLKAASLEAHERQVKGMADKTRYVEAYKAAKQEVEVHVQQLRKEYDPELVRVLEERLAETTSEIEDLQAQMK RAHADEMDSVKGITSELNQATRTLQEIAEEESSLRVKVNNMRVELENLKLEKEQLLEKEAQSSELVQEEESSEAAFKKLISEMEAVIKDAEDMQRMAKEA NQEAENARLRTQQAEEKLLLSTAEIEVAKAAALRAHTEMRKLSETKGDDVLSEEPGKRMRITLLEYVALQKKLSESAGIAERTVAETMNQLELVKAKMNE ESKKLEANLKAIEEIKEATELALQGADAAETARRALEAELKKLRDQEGSMGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12150			Plant protein of unknown funct...		Lus10039107 [exp]	0	1
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10011105 [exp]	2.8	0.8127
					Lus10040066 [exp]	9.3	0.8398
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	12.7	0.7102
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10035865 [exp]	12.8	0.8214
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	19.2	0.8323
AT1G15260			unknown protein		Lus10037547 [exp]	22.6	0.8274
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024650 [exp]	23.2	0.7683
AT3G27050			unknown protein		Lus10032042 [exp]	26.8	0.7931
AT5G10530			Concanavalin A-like lectin pro...		Lus10020452 [exp]	27.4	0.7412
					Lus10039759 [exp]	31.6	0.8139

Compare expression of checked genes

Lus10039107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.