Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62030 622 / 0 diphthamide synthesis DPH2 family protein (.1) AT3G59630 107 / 7e-25 diphthamide synthesis DPH2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038750 [exp] 792 / 0 AT5G62030 574 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10009552 [exp] 99 / 7e-22 AT3G59630 572 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10020375 [exp] 97 / 3e-21 AT3G59630 560 / 0.0 diphthamide synthesis DPH2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G041300 [exp] 657 / 0 AT5G62030 623 / 0.0 diphthamide synthesis DPH2 family protein (.1) Potri.006G123700 [exp] 102 / 3e-23 AT3G59630 578 / 0.0 diphthamide synthesis DPH2 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01866 [flax] [poplar] Diphthamide_syn Putative diphthamide synthesis protein
Representative CDS sequence Show only first row Show all	>Lus10039108 pacid=23150271 polypeptide=Lus10039108 locus=Lus10039108.g ID=Lus10039108.BGIv1.0 annot-version=v1.0 ATGGAGGTTCAGGCGATCCCTCCTCCCAACAGCGGCGGCGCCGGGAGGCCGAAACCAAATCCGAAACGCTTCGTGAAGAACCAGATACCGGAGTCAATCC TCAACGACGCCTCCCTCAACGCCGCCATATCTCTGCTTCCGGCCAACTACAACCTTGAGATTCACAAGTGCGTGTGGCGGCTCCGCTCGATCAAGTGCCG CCGCCTCGCTCTCCAGCTCCCGGAAGGCCTCCTAATGTACTCCCTCATCCTCGCCGACATCTTCACCGCCTTCTCCGACGTCGACCACTGCTTCGTCCTC GGCGACGTCACCTACGGCGCTTGCTGCGTCGACGACTTCTCCGCCGTCTCGCTCGGCGCCGATCTCCTCATCCACTACGGCCACAGCTGCCTGGTTCCTA TCGACAACACCAAAATCCCCTGCCTTTACGTCTTCGTCGAGATCAAGATCGACGTCAATCGCTTGATCGACACCGTAAAGCTCAATTTCACCGACAAGAG CATCGTCCTCGCCGGTACGATTCAGTTCGGCGGAGCTATCCGAGAAACGAAGCCTGAATTGGAGAAGCACGGCCTTCGGGTTCTGATCCCTCAGTCTAAA CCTTTATCTTCCGGTGAAGTCCTCGGCTGCACTGCTCCAAGAGTCTCTGCAGCTGCTTTGGGAGTAAGTAACTTGAGTGACACTGTTGTAGTGTTTGTAG CTGACGGTAGGTTTCATTTGGAAGCTTTCATGATTGCCAATCCTGGAATCAAGGCGTTCAGGTATGATCCGTATATAGGCAAGCTGTTTCTTGAAGAATA CGATCATGTAGGAATGAAGGAGACGAGGAAGAAAGCAGTAGAGAAGGCGAAAACTGCTAAAAGATGGGGGCTTGTTCTTGGCACTTTGGGGAGGCAAGGT AATCCAAGGATTTTGGACAGATTGGAGAAGAAGATGAGAGATAGAGGGTATACTTATATGGTTGTTTTGATGTCCGAGATCAGCCCGACTAGGATCCAGT TGTTTGAGGATTGTGTAGATGCCTGGATTCAGATTGCATGTCCTAGGCTGAGTATTGACTGGGGGGGTGCTTTCCTGAAACCGATATTGACGCCTTTCGA AGCGGAGATTGCGCTTGGGGATGTAAAGGGTTGGTGGGAGAAGAAGAGTTTGGTGGCGAATGCAGGGTGTTGCGGCTGCGAGTTAGGATGTGGAAAGAGT GGCGGAGCTTGTTGCGGCCAGGAAGCTGTGAAGGATGATGATTTCGGTGGAGATTACCCGATGGATTACTATGCGCAGGATGGCGGAGAGTGGAACTCTT CTTACGTGAAGAAAGGAGCTCGTCCTGTTAGAAGGAATGTTGTTCCTGTTGGTAATTGTAACACTGCTGGTTCATGA
AA sequence Show only first row Show all	>Lus10039108 pacid=23150271 polypeptide=Lus10039108 locus=Lus10039108.g ID=Lus10039108.BGIv1.0 annot-version=v1.0 MEVQAIPPPNSGGAGRPKPNPKRFVKNQIPESILNDASLNAAISLLPANYNLEIHKCVWRLRSIKCRRLALQLPEGLLMYSLILADIFTAFSDVDHCFVL GDVTYGACCVDDFSAVSLGADLLIHYGHSCLVPIDNTKIPCLYVFVEIKIDVNRLIDTVKLNFTDKSIVLAGTIQFGGAIRETKPELEKHGLRVLIPQSK PLSSGEVLGCTAPRVSAAALGVSNLSDTVVVFVADGRFHLEAFMIANPGIKAFRYDPYIGKLFLEEYDHVGMKETRKKAVEKAKTAKRWGLVLGTLGRQG NPRILDRLEKKMRDRGYTYMVVLMSEISPTRIQLFEDCVDAWIQIACPRLSIDWGGAFLKPILTPFEAEIALGDVKGWWEKKSLVANAGCCGCELGCGKS GGACCGQEAVKDDDFGGDYPMDYYAQDGGEWNSSYVKKGARPVRRNVVPVGNCNTAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10039108 [exp]	0	1
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	2.0	0.8079
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	2.4	0.7878
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10033590 [exp]	3.9	0.7947
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10005310 [exp]	3.9	0.7900
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	4.0	0.7953
AT2G20940			Protein of unknown function (D...		Lus10034474 [exp]	6.0	0.7749
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	6.6	0.7904
AT3G63390			unknown protein		Lus10024829 [exp]	7.7	0.7583
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10020931 [exp]	8.8	0.7395
AT4G16450			unknown protein		Lus10038803 [exp]	8.8	0.7859

Compare expression of checked genes

Lus10039108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.