Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47720 628 / 0 Thiolase family protein (.1.2.3.4.5) AT5G48230 607 / 0 EMB1276, ACAT2 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) AT1G04710 198 / 4e-59 KAT1, PKT4 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1) AT2G33150 194 / 2e-57 PED1, KAT2, PKT3 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) AT5G48880 192 / 5e-57 PKT2, PKT1, KAT5 PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, 3-KETO-ACYL-COENZYME A THIOLASE 5, peroxisomal 3-keto-acyl-CoA thiolase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038749 [exp] 738 / 0 AT5G47720 663 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10012317 [exp] 627 / 0 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10006362 [exp] 624 / 0 AT5G47720 652 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10023672 [exp] 201 / 6e-60 AT2G33150 818 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10011879 [exp] 193 / 6e-57 AT2G33150 725 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10022812 [exp] 191 / 1e-55 AT2G33150 702 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10011748 [exp] 177 / 2e-50 AT2G33150 767 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004400 [exp] 655 / 0 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Potri.014G168700 [exp] 619 / 0 AT5G48230 665 / 0.0 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) Potri.001G051900 [exp] 191 / 2e-56 AT2G33150 780 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.002G216400 [exp] 187 / 7e-55 AT2G33150 660 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.001G051800 [exp] 181 / 2e-52 AT2G33150 673 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02803 [flax] [poplar] Thiolase_C Thiolase, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00108 [flax] [poplar] Thiolase_N Thiolase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039109 pacid=23150431 polypeptide=Lus10039109 locus=Lus10039109.g ID=Lus10039109.BGIv1.0 annot-version=v1.0 ATGGGTGGATTTCTCGGCACACTTTCTTCTTTATCCGCCACACAGCTTGGTTCCATAGCCATTCAAGGTGCTCTTCAGATGGCGAAGGTCGATCCTTCGA CTGTGCAAGAAGTATACTTTGGCAATGTCCTGAGTGCCAATTTAGGACAGGCTCCTGCTAGACAGGCTGCTTTAGGTGCAGGGATACCTAATTCAGTGGT TTGCACCACTATCAACAAAGTTTGCTCATCAGGAATGAAAGCAACAATGATTGCTGCCCAGACAATTCAGTCAGGTACCCAAGATATTGTTGTTGCTGGT GGGATGGAGAGTATGTCCAATGCACCCAAGTACCTGGCAGGAGCAAGAAAAGGTTCTCGCCTTGGACATGAAACTGTTGTTGATGGCATGCTCAAAGATG GTCTGTGGGATGTGTATAATGACTTTGGGATGGGTGTTTGTGCAGAAATATGTGCCGAGCAACATCGTATAACAAGAGAAGAGCAGGATTCTTATGCTAT ACAGAGCTTTGAGCGAGGCAGTGCAGCACAAAATAGTGGCCTCTTTTCTTGGGAAATAGTACCGGTTGAAATTTCAACAGGAAGAGGGAAACCATCAACT GTAATTAGTAAAGATGAAGGCTTGGGAAAGTTTGATGCGGTAAAACTTAAGAAGCTCAGACCAAGTTTCAAGGACACAGGTGGTACCGTAACTGCTGGGA ACGCCTCTATAATAAGTGATGGTGCAGCAGCACTTGTGCTGGTGAGTGGGGAAAAAGCACGTGAGCTCGGTTTACAAGTGATTGCCAAGATAAAGGGGTT TGCTGATGCCGCTCAAGCCCCTGAGCTTTTCCCTACTGCACCATCTCTTGCAATTCCAAAAGCTATTTCAAATGCAGGCCTGAAAGCGTCTCAGATTGAT TACTACGAGATAAACGAAGCGTTTTCTGTCGTAGCACTTGCCAACCAGAAACTGCTTGGTCTCGATCCCGAAAAGGTGAACGCTCATGGTGGAGCAGTAT CACTCGGACATCCTCTGGGATGCAGCGGAGCTCGTCTACTCGTGACATTGTTAGGGGTGCTGAGACATAAGAATGGGAAGTACGGGGTAGCTGGGATCTG CAATGGAGGAGGAGGAGCATCTTCCCTTGTTCTTGAGCTCATGCCATCTTCAGCAGCTAGACGTTCATCGTTGTGA
AA sequence Show only first row Show all	>Lus10039109 pacid=23150431 polypeptide=Lus10039109 locus=Lus10039109.g ID=Lus10039109.BGIv1.0 annot-version=v1.0 MGGFLGTLSSLSATQLGSIAIQGALQMAKVDPSTVQEVYFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKATMIAAQTIQSGTQDIVVAG GMESMSNAPKYLAGARKGSRLGHETVVDGMLKDGLWDVYNDFGMGVCAEICAEQHRITREEQDSYAIQSFERGSAAQNSGLFSWEIVPVEISTGRGKPST VISKDEGLGKFDAVKLKKLRPSFKDTGGTVTAGNASIISDGAAALVLVSGEKARELGLQVIAKIKGFADAAQAPELFPTAPSLAIPKAISNAGLKASQID YYEINEAFSVVALANQKLLGLDPEKVNAHGGAVSLGHPLGCSGARLLVTLLGVLRHKNGKYGVAGICNGGGGASSLVLELMPSSAARRSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	0	1
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	1.7	0.9849
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	2.0	0.9845
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	3.0	0.9790
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	4.6	0.9751
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	5.5	0.9757
AT5G41810			unknown protein		Lus10003901 [exp]	5.7	0.9775
					Lus10017917 [exp]	6.0	0.9753
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	6.0	0.9732
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10028311 [exp]	6.5	0.9703
AT2G24370			Protein kinase protein with ad...		Lus10021596 [exp]	7.3	0.9639

Compare expression of checked genes

Lus10039109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.