Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50920 489 / 1e-170 Nucleolar GTP-binding protein (.1) AT1G10300 466 / 3e-161 Nucleolar GTP-binding protein (.1) AT1G80770 100 / 6e-24 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G23860 68 / 4e-13 GTP-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038748 [exp] 565 / 0 AT1G50920 940 / 0.0 Nucleolar GTP-binding protein (.1) Lus10002558 [exp] 501 / 2e-175 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1) Lus10027370 [exp] 498 / 5e-174 AT1G50920 1034 / 0.0 Nucleolar GTP-binding protein (.1) Lus10007959 [exp] 454 / 2e-162 AT1G50920 498 / 2e-174 Nucleolar GTP-binding protein (.1) Lus10019508 [exp] 94 / 4e-21 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 93 / 1e-20 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054000 [exp] 498 / 3e-174 AT1G50920 1048 / 0.0 Nucleolar GTP-binding protein (.1) Potri.001G258900 [exp] 497 / 1e-173 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1) Potri.002G134900 [exp] 97 / 2e-22 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06858 [flax] [poplar] NOG1 Nucleolar GTP-binding protein 1 (NOG1)
Representative CDS sequence Show only first row Show all	>Lus10039110 pacid=23150349 polypeptide=Lus10039110 locus=Lus10039110.g ID=Lus10039110.BGIv1.0 annot-version=v1.0 ATGACTTCTTGCGCGAGGGTTCAGTATAATTTCAAGAGCATAACGCCGGTTCCGAATGGGAAGGATTTCATCGACATCGTCCTGTCAAAAACACAAAGGC AGACGTCTACAGTCATCCACAAGGGATCGCGTACAGTCGAGATCCGCAAGTTCTACATGCGTAAGGTGAAGTTCACTCAGTCGACTTACAACGACAAGCT CTCGAAAATCATCGACGACTTCCCTCGTCTGGATGGCATTCATCCTTTCTATGGCGACTTCCTCCACATTCTCTTCGACAGAGATCATTTCAAAGTTGCT CTCGGCCAGTTAAACACGTCCAGGAATAACATCAGCAAGATTGCTAAGGAATATGTAAAGATGTTGAAGTATGGCGACTCTCCATACAGGTGCAAATGCT TGAAGGTTTCTGCACTCGGCAGAATGTGTACTGCTAACAAGAGGATCGGACCTAGTTTGGCTTATCTTGAAGAGGTCAGGCAGCACATGGCTAGGCGTCC TTCGATTGATCCGAATACTCGGACCATCTTGATTTGCGGGCTTCCGAATGTTGGGAAGAGCTCCTTCATGAACAAGATCACTAGGCTGACGTGGATGTCC AGTCGCCACACGGATTACAATTACTTGAGGTATCAGGTAATTGATACTCCTGGAATCCTGAACAGGCCATTGGAGGATCGGAATGGAATCGAGATGTGTA CCATTACAGCTCTAGCTCATTTGAGAGCTGCTGTTTTGTTCTTCCTGGACCTCTCGGGATCGTGTGGCTCCACCATTGCTCAGCAGTCGGCTTTGTTTCA TAGCATCAAGCCGTTGTTCATGAACAAGCCGTTGACCATCGTTTGCAACAAAACTGACTTGCAGACTTTGGAAGGGTTAAGTGAGGAAGATAGGAAGCTG GTGATGGATATGAAAGCTGAAGCATCCAAGCGGAAAAATTGTTGA
AA sequence Show only first row Show all	>Lus10039110 pacid=23150349 polypeptide=Lus10039110 locus=Lus10039110.g ID=Lus10039110.BGIv1.0 annot-version=v1.0 MTSCARVQYNFKSITPVPNGKDFIDIVLSKTQRQTSTVIHKGSRTVEIRKFYMRKVKFTQSTYNDKLSKIIDDFPRLDGIHPFYGDFLHILFDRDHFKVA LGQLNTSRNNISKIAKEYVKMLKYGDSPYRCKCLKVSALGRMCTANKRIGPSLAYLEEVRQHMARRPSIDPNTRTILICGLPNVGKSSFMNKITRLTWMS SRHTDYNYLRYQVIDTPGILNRPLEDRNGIEMCTITALAHLRAAVLFFLDLSGSCGSTIAQQSALFHSIKPLFMNKPLTIVCNKTDLQTLEGLSEEDRKL VMDMKAEASKRKNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50920			Nucleolar GTP-binding protein ...		Lus10039110 [exp]	0	1
AT1G50920			Nucleolar GTP-binding protein ...		Lus10038748 [exp]	1.0	0.8948
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10021140 [exp]	2.4	0.8297
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10018610 [exp]	3.9	0.7826
AT2G33360			Protein of unknown function (D...		Lus10023729 [exp]	6.1	0.7243
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10017670 [exp]	8.0	0.7815
					Lus10001494 [exp]	11.5	0.7506
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10007983 [exp]	16.7	0.7392
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	33.8	0.7348
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002017 [exp]	40.6	0.7333
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10011024 [exp]	40.6	0.7073

Compare expression of checked genes

Lus10039110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.