Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51310 664 / 0 transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038747 [exp] 896 / 0 AT1G51310 669 / 0.0 transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G259000 [exp] 722 / 0 AT1G51310 683 / 0.0 transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF03054 [flax] [poplar] tRNA_Me_trans tRNA methyl transferase
Representative CDS sequence Show only first row Show all	>Lus10039111 pacid=23150626 polypeptide=Lus10039111 locus=Lus10039111.g ID=Lus10039111.BGIv1.0 annot-version=v1.0 ATGACGATGAAGCTTTTAGCTTTCCGGCCGATATTCTGCGCCGGCACTAAGCTTCTTCCATCTCTTCTCTTCCCTCCAAAATCATATTCTCTCCGATTAT CTCCTCCTCTAATTTTCCTCAATCATTCCTCTTCTTCCTCCTGGTCACGCCGCTTCAGCAGCTCCTTAGTTTCGCAAGTTTCTCAACCGACGCCGGCGGT GATTGATCCGTACTATTTATCTTGCTGTATGCCTGAAAAGGATAAACTCAGAATTGCTGTTTTGATCAGTGGAGGAGTGGATAGCAGCGTTGCCCTTCGA CTTCTCCATGCTGCTGGTCATCAATGTACTGCATTCTACCTCAAAATCTGGTTCCAGGAAGACTATGAGAACTTTTGGTCAGAGTGTCCTTGGGATGAGG ATTTGAAGTATGCAACAGCTGTTTGTGATCAGGTTGATGTGCCATTACAAGTTGTGCATTTGACTGATGAATACTGGAACAATGTGGTGTCTTACATTAT CAAGGAGTACCAATGTGGCCGGACTCCAAATCCAGATGTTCTATGCAACACACGGATCAAATTCGGTGCTTTCCTAGATGCTGTAAATGGCATGGGATTC GATTATATCGCTTCGGGGCATTACGCCAGGGTGGTTCACCCTTCCTCGGGTCATGTCGACCAGCCTTCCGTTTTGGAGCTCTCTAAAGACATGGTGAAGG ATCAAACTTATTTCCTGTCACATTTATCACAAGCACAACTGAACCGTGTTATATTCCCACTAGGCTGCATTCCGAAGGACGAAGTTCGCAAACTTGCTAC AACATTCGACCTCCCTAACAAAGATAGAAAGGATTCGCAAGGAATCTGCTTCTTAGGAAAAATCAAATTCAGTGAATTCGTTGCAAGACAGATTGGAGAG AGGGAAGGGATCATACTCGAAGCCGAGACCGGTGATTTCCTCGGTATGCATAGGGGATTCTGGTTCTACACAATCGGCCAACGACAGGGTCTTCGCCTTC CTGGTGGGCCCTGGTATGTTGTGGACAAGGATGTGGGCAACAATGTAGTGTTCGTGTCACGAAACTACTTTTCCGTCGACAAGAAAAGGCGATCTTTTCG CGTTGGCTCGCTGAAATGGCTCTCTGGGAGACCTCCTGAGCAAACACTGCAGCTCCAATGCAAGGTCCGGCATGGACCAAGGTTCTACGACTGTAACGTG ACGATTGATGATGAAATTGCGACGGTCCACTTGTCAGAGGACGATCAAGGTCTGGCAGCAGGGCAGTTTGCAGCCTTCTACAAGGAGAGAAGGTGTGTAG GGTCCGGTGTGATATTGGAGTCCTGGGATGATCAAGGTTTCCCTGTGTGTGAAAGGGCACTGGAATTGGCGAAAGTAGAGGACATCTCTAAGCTTGGAAA ACCAGTTAAGATCATGATGAAGCCAGAGACTCCAGTAGATGCAAGACTAGAACATATACACTTGGGAGCTAATTAA
AA sequence Show only first row Show all	>Lus10039111 pacid=23150626 polypeptide=Lus10039111 locus=Lus10039111.g ID=Lus10039111.BGIv1.0 annot-version=v1.0 MTMKLLAFRPIFCAGTKLLPSLLFPPKSYSLRLSPPLIFLNHSSSSSWSRRFSSSLVSQVSQPTPAVIDPYYLSCCMPEKDKLRIAVLISGGVDSSVALR LLHAAGHQCTAFYLKIWFQEDYENFWSECPWDEDLKYATAVCDQVDVPLQVVHLTDEYWNNVVSYIIKEYQCGRTPNPDVLCNTRIKFGAFLDAVNGMGF DYIASGHYARVVHPSSGHVDQPSVLELSKDMVKDQTYFLSHLSQAQLNRVIFPLGCIPKDEVRKLATTFDLPNKDRKDSQGICFLGKIKFSEFVARQIGE REGIILEAETGDFLGMHRGFWFYTIGQRQGLRLPGGPWYVVDKDVGNNVVFVSRNYFSVDKKRRSFRVGSLKWLSGRPPEQTLQLQCKVRHGPRFYDCNV TIDDEIATVHLSEDDQGLAAGQFAAFYKERRCVGSGVILESWDDQGFPVCERALELAKVEDISKLGKPVKIMMKPETPVDARLEHIHLGAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51310			transferases;tRNA (5-methylami...		Lus10039111 [exp]	0	1
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10041455 [exp]	2.0	0.8060
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	6.5	0.7529
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10025895 [exp]	11.6	0.7517
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	13.6	0.7984
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	16.7	0.7687
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	23.4	0.7018
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	24.1	0.7858
AT3G57000			nucleolar essential protein-re...		Lus10035220 [exp]	24.1	0.7744
AT2G46550			unknown protein		Lus10030237 [exp]	24.3	0.7347
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001625 [exp]	25.0	0.7680

Compare expression of checked genes

Lus10039111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.