Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22260 269 / 2e-89 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038746 [exp] 370 / 4e-130 AT2G22260 339 / 6e-118 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004500 [exp] 282 / 1e-95 AT2G22260 345 / 4e-120 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039112 pacid=23150561 polypeptide=Lus10039112 locus=Lus10039112.g ID=Lus10039112.BGIv1.0 annot-version=v1.0 ATGAGCTTCAAACAGAAAACACTGATGATACAACAACCGACCACAAACCCTGATCCCAAAATCAGTTGCGACGACGAGGCAACAACAACAACTGCCAAGA AGCAAACACTCGATTTAGGAAATGGAAGCGAAATCATCTACTTGCCTCGATTCTTACCGTTCGACTATTCGTGGAAGTTCTTCGAATATCTCGACACTCA GATCCCTTGGACCCGACCCACCGTCCGCGTCTTCGGCCGCTCCTGCCTGGAGACATGCTATGTTGCAAGTCCAGGATTGCCCGAGCTGATGTACAGTGGG TATAAGCCAATTGCCTATTCTCGGGATGACTATCCTCCTCTTAAGGAAATCTTGGATGCTGTAGAGATTGTGTTTTCTCTCTTGTTTGACGTCTGTTCAA TTGGTTTGCAGCTCCCTGATGTTTTGCAAAACCACTTCTGTTTTTCCAAGGACCACAAAGCACTTCCGGGAAGCAAATTCAACAGCTTGCTCCTGAACAG GTATAAAGGTGGGAATGACAATGTTGGTTGGCATGCTGACGACGAGAAGCTCTACGGACCCACTCCAGAGATCGCCTCGGTTTCATTTGGGTGCGAACGT GAGTTCTTGTTGAAGAAGAGACCCACTAAATCATCCAAAGCATATGGAAAACCAGGAGATGAGCCGGTTAAGAAGCGGCTAAAGAAGACTGAAACTGGCG GTGAACATCATTCGTTCAGGTTGAAGCATGGATCGTTGCTTGTGATGAGAGGCTACACTCAAAGAGACTGCTTCACTCTGTGCCGAAGCGTGCAAAAGTC GAGGCGACACGAATCAACCCCACCTTCAGGCTTGTCCTCAGAACTTGTCTTCATAAAGGAGTGCCAGCACAGATTTCCGGTGCGTGATGCGCTTAACGAG AGAAGAGGGATATGA
AA sequence Show only first row Show all	>Lus10039112 pacid=23150561 polypeptide=Lus10039112 locus=Lus10039112.g ID=Lus10039112.BGIv1.0 annot-version=v1.0 MSFKQKTLMIQQPTTNPDPKISCDDEATTTTAKKQTLDLGNGSEIIYLPRFLPFDYSWKFFEYLDTQIPWTRPTVRVFGRSCLETCYVASPGLPELMYSG YKPIAYSRDDYPPLKEILDAVEIVFSLLFDVCSIGLQLPDVLQNHFCFSKDHKALPGSKFNSLLLNRYKGGNDNVGWHADDEKLYGPTPEIASVSFGCER EFLLKKRPTKSSKAYGKPGDEPVKKRLKKTETGGEHHSFRLKHGSLLVMRGYTQRDCFTLCRSVQKSRRHESTPPSGLSSELVFIKECQHRFPVRDALNE RRGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Lus10039112 [exp]	0	1
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10029734 [exp]	3.3	0.7852
AT1G30890			Integral membrane HRF1 family ...		Lus10007418 [exp]	3.5	0.7089
					Lus10022574 [exp]	22.3	0.6862
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	53.7	0.6894
					Lus10019211 [exp]	60.8	0.6692
					Lus10039365 [exp]	63.9	0.6516
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10029445 [exp]	67.1	0.6082
AT1G67000			Protein kinase superfamily pro...		Lus10026761 [exp]	112.7	0.6368
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10024341 [exp]	138.7	0.6406
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031729 [exp]	210.5	0.6070

Compare expression of checked genes

Lus10039112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.