Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17170 360 / 2e-128 ATRAB-B1B, AT-RAB2, AtRABB1c, AtRab2A ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) AT4G35860 330 / 3e-116 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT4G17160 306 / 6e-107 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1) AT3G12160 182 / 7e-58 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 181 / 1e-57 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT5G60860 181 / 2e-57 AtRABA1f RAB GTPase homolog A1F (.1) AT4G39990 181 / 3e-57 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT3G15060 180 / 3e-57 AtRABA1g RAB GTPase homolog A1G (.1) AT1G16920 180 / 4e-57 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT5G45750 179 / 5e-57 AtRABA1c RAB GTPase homolog A1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038744 [exp] 362 / 3e-129 AT4G17170 434 / 2e-157 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10025184 [exp] 335 / 1e-118 AT4G17170 389 / 1e-139 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10016066 [exp] 315 / 7e-110 AT4G17170 369 / 3e-131 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10020746 [exp] 185 / 3e-59 AT1G06400 375 / 3e-134 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10029789 [exp] 183 / 2e-58 AT1G06400 373 / 3e-133 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10015297 [exp] 181 / 1e-57 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10017679 [exp] 180 / 3e-57 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1) Lus10025432 [exp] 180 / 3e-57 AT5G60860 422 / 1e-152 RAB GTPase homolog A1F (.1) Lus10002178 [exp] 180 / 3e-57 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G002200 [exp] 362 / 3e-129 AT4G17170 394 / 6e-142 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Potri.009G159600 [exp] 326 / 5e-115 AT4G35860 412 / 7e-149 GTP-binding 2 (.1.2) Potri.001G270100 [exp] 185 / 4e-59 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.011G061300 [exp] 181 / 9e-58 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1) Potri.007G096000 [exp] 181 / 1e-57 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.011G070300 [exp] 181 / 1e-57 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.005G073000 [exp] 179 / 8e-57 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.004G061000 [exp] 179 / 9e-57 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.009G027900 [exp] 179 / 1e-56 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.006G057700 [exp] 178 / 1e-56 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10039114 pacid=23150286 polypeptide=Lus10039114 locus=Lus10039114.g ID=Lus10039114.BGIv1.0 annot-version=v1.0 ATGAAAATCTTGACTGGTTGTTTGTTGATTCTGGATGTAGGAGTTGGGAAATCGTGTCTGCTGCTACAGTTCACGGACAAGAGGTTCCAGCCAGTCCATG ACCTTACCATCGGCGTGGAATTCGGTGCTCGGATGATCACCATTGACAACAAGCCTATCAAGCTCCAGATTTGGGACACGGCTGGTCAGGAATCCTTTAG ATCAATCACTAGGTCTTATTACCGAGGTGCTGCTGGTGCTCTGCTCGTCTATGATATCACAAGGCGGGAAACTTTTAATCATCTGGCTAGTTGGTTAGAG GATGCTAGACAGCACGCAAATGCAAACATGACAATTATGCTCATCGGTAACAAGTCTGATCTTGCTCACCGGAGGGCTGTGAGCACCGAGGAAGGGGAGC AGTTCGCTAAGGAGCATGGGTTGATCTTCATGGAGGCTTCTGCAAAAACTGCTCAGAACGTTGAGGAGGCTTTTATTAAAACAGCTGCAACCATCTACAA GAAGATCCAAGATGGTGTCTTTGATGTGTCAAATGAGTCTTATGGGATAAAAGTTGGATACGGTGGAATTCCCGGACCGTCTGGAGGAAGAGATGGGTCT ACTTCACAATCTGGTGGATGTTGCAGTTGA
AA sequence Show only first row Show all	>Lus10039114 pacid=23150286 polypeptide=Lus10039114 locus=Lus10039114.g ID=Lus10039114.BGIv1.0 annot-version=v1.0 MKILTGCLLILDVGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE DARQHANANMTIMLIGNKSDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGS TSQSGGCCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10039114 [exp]	0	1
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	2.4	0.8359
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	3.7	0.8096
AT1G22540			Major facilitator superfamily ...		Lus10009462 [exp]	4.0	0.7823
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10018222 [exp]	6.0	0.7562
AT3G52560		MMZ4 ,UEV1D ,UE...	MMS2 ZWEI HOMOLOGUE 4, ubiquit...		Lus10029415 [exp]	6.9	0.8057
AT2G36060		MMZ3 ,UEV1C	UBIQUITIN E2 VARIANT 1C, MMS Z...		Lus10004211 [exp]	10.2	0.7552
					Lus10017454 [exp]	10.7	0.7705
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10040622 [exp]	10.8	0.7193
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Lus10040844 [exp]	11.0	0.7567
AT2G42780			unknown protein		Lus10010947 [exp]	15.4	0.7640

Compare expression of checked genes

Lus10039114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.