Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13300 1152 / 0 VCS VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13290 1135 / 0 VCR varicose-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038742 [exp] 1615 / 0 AT3G13300 733 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038767 [exp] 779 / 0 AT3G13300 528 / 3e-175 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039096 [exp] 261 / 8e-78 AT3G13290 131 / 2e-33 varicose-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G001400 [exp] 1607 / 0 AT3G13290 1170 / 0.0 varicose-related (.1) Potri.011G166400 [exp] 1173 / 0 AT3G13300 1203 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G469500 [exp] 1168 / 0 AT3G13300 1236 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G002100 [exp] 887 / 0 AT3G13300 714 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10039116 pacid=23150576 polypeptide=Lus10039116 locus=Lus10039116.g ID=Lus10039116.BGIv1.0 annot-version=v1.0 ATGGCTTCGGCGCCTTCCGGTAATCCGTATCAACACCCCACCGCAGAAGGAAGTGGCGGATTAGGCAGTGCTGGCAGCGGAGGTTTTGACATCAACAAGT TGTTCAAGCCTTCGTCAAACCCTATGGCCATGAACATGAACGCCATGCCTCCACCTCCTCAGCATCAGCAACATCAGCAGCAGTTGCAGAGTGCAGTTAG CGGTGGAGCTGCTTCGCCTTCTTTCGCTCTACCATCGTCGGGTCCTCCTCAGTATCTCACGCCGTCCTCTTCTTACCCTCCGCCAGCTGGCCCGTACAAT CCTTATCAACAACATCAGTTCATCTCGCCGTATCCTCCTCCGCAGCCGACGACCCAGCTTCAGCAGCCTCACCAGAACCAGTTCCTTGCAAACCTCCAGC AACAGCAGCAGCTTCACAGCAGGCTTAACCAGCAGCCGATTTCGTCTTCTTATCCGTCTCCTGCGTCGTCTGTTGTCCCGTCGCCGCCCTTCTCCCCTAC TCCCAATCCCGGCGGTGCTGTTCTGATGGACATCTTGAACGGTCAAGGTCAACAGCAGCAGCAGCAGCATCCGGTTTCTGCGAACCTTACTCTGCCATTC TCTTCAGCTGGTGCATCGACTGTCCCTAGCGCTCCTCATGTCGCTTTAGCGTCCCCAACCCAGCTGCCGCCTGGGGCTTCTCCTGTGAGGTTGCTCAGCA CAAAGCTTCCCAAGGGTCGCCACCTGATCGGCAGTCAAGTTGTGTACGATATTGATACGAGGATGCATGGTGAGGTGCAGCCTCAACTTGAATGTACTCC CATTACTAAGTATCAATCGGATCCTGGCCTTGTGCTTGGCCGGCAGATTGCGGTTAACAGGAACTATATTTGCTATGGTCTGAAGGCTGTGACAATTCGC ATTCTCAACATCAATACGGCCTTAAGATCCTTGCTTAGGGGTCATGAAAAGAAAGTGACAGACATGGCCTTCTTTGCTGAAGATGTTCACTTACTTGCCA GTGCATGTGTTGAGGGCCGGGTTTTCATTTGGAAGATCGATGAGCGTCTTGATGAAGAAGAAAAGCCTAAAATATTTGAACGGATTACCCTCGCACTTCA TATAGTTGTTGATGGAGAATCTGTTCATCCATGTGTCTGCTGGCATCCTCACAAACAAGAAATCCTGATGGTTGCGATTGGAAATAGTGTATTGAAGATC GACACTATTAAAGTTGGGAAGAACGGCGGGTTTTCGGGAGAGAAACCTTTAAGCTGTTCCATAAATAACTTGATTGATGGAGTGCAATTTGTTGGTAAGC ATGACGGCGAAGTTACTGGACTGTCAATGTGCCAGTGGATGACTACCCGTTTGGCTTCAGCTTCAAGTGATGGAACGGTCAAAATTTGGGATGATCGCAA GGCAGTACCACTTTCAATCCTAAGACCACACGATGGTAGACCTGTCAGCTCTGTGTCATTCTTGACTGCCTCACATCGACCAGATCATATCATCCTTATA ACTGGGGGTCCTCTAAATCAGGAAGTTAAGGTATGGGCCTCCTCAAGTGAGGATGGATGGCTGCTACCCAGTGATTCTGAAACATGGAATTGTACCCAGA GTTTGACTTTAACAAGTTCTGCCGCATCTTTAGAGGACACATTCTTTAACCAAGCTGTGGCCTTGCCTCGTGCCGGTTTGTTTCTACTGGCAAATGCAAA GAAGAATGCAATATATGCTGTTCACATTGAGTATGGTTCATGTCCAGCTGCAACACGCATGGATTACATAGCTGAGTTCACAGTTACAATGCCGATTCTG AGTCTGACTGGTACTAGTGATAGTTTGCTGAATGGTGAACACATTGTGCAAGTGTATTGTGTTCAGACAACGGCTATCCAGCAGTATGCATTGGACTTGT TGCAGTGTCTGCCACCTCCCATAGAAAATGTTGAGTTGGAGAAATCAGAATCTAATGCTTCTCGTGCTCTCGATGCTGTAGTGTCTAATGCTTCTGCTGC AACTGAGTCGTCTCTTGGAAATAAACCCATTGAGATATCTGCAGGTAGCACAACTTCTGCCCAGCCTCCAATTTCAAGCAATGTAGAGAGTACTTCAATT GCATCTCATCACCAGAACTTAGGACCTCCTAAAGATTCCAATTTTCCTATTGTACCTTCTTCAGGTGTAGAGATTAAGACCACAACTATGGTCCATAGCA ATGCTGAAAACATGAGCAAGTTGACGCCTCCTCCTTCAAGTCCTCGTCCTTCTTCAAAAATGTCAGGTCTTGAGAACTCATCCAACAGTGTAGATACTGG CTTACATACCACTGACCATGGTGATGAACATCCCATGGCAGACTATTTGCTTAGCCACAGACCCGATATGGTGAAGGATAATGTGCCTGAGAACTCTATG CTACCTGAAAACACAAGGAAGGGTGAAAAAAGCATTGCACAAACTGATATGTCAATGGTTGCAGAGCATCCCACAGTTTATAAGCACCCAACACATTTAG TCACTCCGTCTGAGATACTATCGAGGGCACCATCTACCGATAGTCCCCTTGTTTCTCAAGGTCTGGCTAGAGGAGAACCTAAGGTTCAAGATGTGATTGT CAATAATGATACAGAAAGTGTTGAAGTTGTAGATGTTAAAGTAGTTGAGATGGGTTCCAAGCAAAATAGTGGATTTGACTTGAGTAGAGAATCCCACATC ACTGTCCCTGAGAGAAAGGAAAAGTCTTTCTATTCTCAGGCATCTGATCTTAACCTTCAGATGGCCAGGGATACTGAGATGGAATCATATGCTGCAGTGG TAGCTAGGCAAGCTAATGATGATACTGTCACCAAGTTACATGACAAACCTGCAAACAATACTGAAGATGGCGAGCGAGATAGTTCAAAAGATGCAACACA AAGAGTTAGTGAACCAGAAACTCATTCTGTTCAGCAGTCCCCAGCTCCAGCATCGAAAGGCAAAAAACAGAAGGGAAAAAACTCTCAAGCATCTGCCGTG GCAGCAACCACAAGTCCTTTTAATTCCACAGATTCATCAAACGAACCAGGCTGCAGTTCTGGCCCTCATCCTAATGATGCTTCTGTCTCCCAGATATCAG CCCTGCAAGATACACTTGACCAGCTGCTGAATATGCAGAAAGAGATGCAAAAGCAGATGAACTCGATGATTTCAGTTCCTGTTTCAAAGGAAGGCAAAAG GCTAGAGGCATCCTTGGGCCGCAATGTAGAAAAAGTTGTAAAAGCAAACACAGATGCTATGTGGGCTCGGTTCCAAGAAGAAAATGCTAAACGCGAGAAG TTAGAACGAGATCGTAACCAGCAATTGACAACTTTATTGACAAATTTTATAAACAAGGACTTCCCAAGTTCCTTGGAGAAGGTTCTTAAGAAGGAAGTAA CTGCTGTTGGACCTGCTGTGGCCCGTGCTATATCTCCTGTTCTTGAGAAGACCATATTATCAGCTATTGCAGAGTCATTCCAGAAAGGGGTCGGGGATAA GGCGGTGGGGCAATTAGAAAGGTCAGTTAGTTCAAAAATGGAAGCAACCGTGGCAAGGCAAATCCAGTCACAGTTTCAAACTTCTGGCAAACAGGCTCTT CAGGATTCCTTGAGATCTAGCTTGGAAGCTTCAATTATTCCTGCATTTGAGATGGCATGCAAAGCTATGTTCGACAAAGTTGATGCTACATTTCAGAAGG GACTTGCGAGTCATATAAGTTCTGCTCAGCAGCAATTTGATTCAACTCATTCTCCTCTTGCTGTTGCTCTGAGGGATGCCATCAATTCAGCATCTTCAAT CACTCAAACGCTAAGTGGAGAGCTGGCTGATGGTCAACGCAAGATCTTAGCTTTTGCGAATTCTAAAGCCATTCAGCCATCTGCACTAAGTAATGGACCA CTTTCAAGTTTGCACGAGATGACCGAGGTGCCATTAGACCCTACAAAGGAACTATCCAGATTGGTAGCTGAGGGAAAATATGACGATGCATTCACTAAAG CTCTTCACAGAAGTGACGTGTCGATTGTTTCCTGGCTATGCTCACAGGTTGATCTGAAGGGTATGTTGTCCATGTCGCCACTGCCTCTAAGCCAAGGAGT GGTGCTAGCTCTGTTGCAGCAACTGGCCTGTGATATGATCAACGACACCTCGAAGAAACTGTCGTGGATGTCGGATATCGCGATAGCCATTAACCCTTCG GATCCAATGATATCAATGCACGTAAGACCCATCTTCGACCAGGTATACCAGATACTGAACCACCATAGGAATCTGCAGACGACCTCGGCCGGGGATGTAT CCCAAATCAGGCTTCTGATGTACGTCATAAACTCTGTGCTGATGAACTGTAAATGA
AA sequence Show only first row Show all	>Lus10039116 pacid=23150576 polypeptide=Lus10039116 locus=Lus10039116.g ID=Lus10039116.BGIv1.0 annot-version=v1.0 MASAPSGNPYQHPTAEGSGGLGSAGSGGFDINKLFKPSSNPMAMNMNAMPPPPQHQQHQQQLQSAVSGGAASPSFALPSSGPPQYLTPSSSYPPPAGPYN PYQQHQFISPYPPPQPTTQLQQPHQNQFLANLQQQQQLHSRLNQQPISSSYPSPASSVVPSPPFSPTPNPGGAVLMDILNGQGQQQQQQHPVSANLTLPF SSAGASTVPSAPHVALASPTQLPPGASPVRLLSTKLPKGRHLIGSQVVYDIDTRMHGEVQPQLECTPITKYQSDPGLVLGRQIAVNRNYICYGLKAVTIR ILNINTALRSLLRGHEKKVTDMAFFAEDVHLLASACVEGRVFIWKIDERLDEEEKPKIFERITLALHIVVDGESVHPCVCWHPHKQEILMVAIGNSVLKI DTIKVGKNGGFSGEKPLSCSINNLIDGVQFVGKHDGEVTGLSMCQWMTTRLASASSDGTVKIWDDRKAVPLSILRPHDGRPVSSVSFLTASHRPDHIILI TGGPLNQEVKVWASSSEDGWLLPSDSETWNCTQSLTLTSSAASLEDTFFNQAVALPRAGLFLLANAKKNAIYAVHIEYGSCPAATRMDYIAEFTVTMPIL SLTGTSDSLLNGEHIVQVYCVQTTAIQQYALDLLQCLPPPIENVELEKSESNASRALDAVVSNASAATESSLGNKPIEISAGSTTSAQPPISSNVESTSI ASHHQNLGPPKDSNFPIVPSSGVEIKTTTMVHSNAENMSKLTPPPSSPRPSSKMSGLENSSNSVDTGLHTTDHGDEHPMADYLLSHRPDMVKDNVPENSM LPENTRKGEKSIAQTDMSMVAEHPTVYKHPTHLVTPSEILSRAPSTDSPLVSQGLARGEPKVQDVIVNNDTESVEVVDVKVVEMGSKQNSGFDLSRESHI TVPERKEKSFYSQASDLNLQMARDTEMESYAAVVARQANDDTVTKLHDKPANNTEDGERDSSKDATQRVSEPETHSVQQSPAPASKGKKQKGKNSQASAV AATTSPFNSTDSSNEPGCSSGPHPNDASVSQISALQDTLDQLLNMQKEMQKQMNSMISVPVSKEGKRLEASLGRNVEKVVKANTDAMWARFQEENAKREK LERDRNQQLTTLLTNFINKDFPSSLEKVLKKEVTAVGPAVARAISPVLEKTILSAIAESFQKGVGDKAVGQLERSVSSKMEATVARQIQSQFQTSGKQAL QDSLRSSLEASIIPAFEMACKAMFDKVDATFQKGLASHISSAQQQFDSTHSPLAVALRDAINSASSITQTLSGELADGQRKILAFANSKAIQPSALSNGP LSSLHEMTEVPLDPTKELSRLVAEGKYDDAFTKALHRSDVSIVSWLCSQVDLKGMLSMSPLPLSQGVVLALLQQLACDMINDTSKKLSWMSDIAIAINPS DPMISMHVRPIFDQVYQILNHHRNLQTTSAGDVSQIRLLMYVINSVLMNCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	0	1
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	2.2	0.9205
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	3.0	0.9013
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	4.5	0.9071
AT2G43410		FPA	RNA binding (.1.2.3.4)		Lus10019359 [exp]	4.9	0.8655
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	4.9	0.8929
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027157 [exp]	5.7	0.8404
AT1G10050			glycosyl hydrolase family 10 p...		Lus10011465 [exp]	7.5	0.8633
AT5G53480			ARM repeat superfamily protein...		Lus10008864 [exp]	7.7	0.8871
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10014370 [exp]	9.2	0.8892
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10033635 [exp]	9.5	0.8644

Compare expression of checked genes

Lus10039116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.