Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24000 737 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G13230 493 / 1e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 491 / 5e-164 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 484 / 8e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 486 / 3e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 477 / 5e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 477 / 3e-160 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 481 / 1e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 469 / 5e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 471 / 8e-158 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038741 [exp] 1267 / 0 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 496 / 5e-168 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006123 [exp] 492 / 4e-166 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 495 / 2e-165 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001617 [exp] 484 / 1e-163 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 490 / 1e-162 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 491 / 2e-162 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 491 / 4e-162 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038839 [exp] 479 / 9e-162 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G001200 [exp] 845 / 0 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 525 / 2e-175 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 513 / 3e-172 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 498 / 2e-168 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 494 / 3e-167 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 494 / 4e-166 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086900 [exp] 492 / 5e-166 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 494 / 3e-165 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 496 / 4e-165 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 488 / 1e-164 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039117 pacid=23150625 polypeptide=Lus10039117 locus=Lus10039117.g ID=Lus10039117.BGIv1.0 annot-version=v1.0 ATGGCGATCGTCATTCACATAGGTCGTCGCCATCTTCATTTCCGAAAGTTCAATCCTTGTTTCTCTATACCCCGTTCATCTCTTTCAACCTCCTCATCAC GCCCCACTTCCACTGATCATCATCGTCATCTTCCAGAATCCGATCATCTGCTTCGTCAGGAACAGGTCTCATGCGCCATTGTTCAGGATCATCACCTTCT CCGCAAGAGCCTCCAATCGTCAGGAACCGGTCTCCATGTTCTGGACCTCATCGACCATGGATCTCTCGAACCCGATCGCTCTCTCTACCATGCCCTGCTC AAGAAGTGCACCCGTCTCGGCAGGCTCGAGGAAGCAAAGATCGTGCATAGCCACTTGCTCAATTCCCGGTTCAGTGGCGATTCAGTTCTCTTCACCACCC TGATTAATCTTTACTCGAAATGCGGCTCCCTAGACGATGCACGCCACCTGTTCGACGAAATGCCTAACTGTCGAGATATTGTAGCTTGGACTGCACTCAT TGCTGGATTCTCTCAACGCGATCGCCCTCGAGATGCTATTGTTATGTTCCGACGAATGCTAGCCCTCGGTTTGATCCCCAACGAGTTTACATTGTCCAGT GTTTTAAAGGCTGCTTCTGGCCTCGGTCTTTCCGGTCATGCTAATGGTATGCAACTCCATTCGTTTGCTTTGAAACTAGGTTATGTATCGGATGTCTTCG TTGGCAGTGCTCTGGTTGACATGTATGCCAGGTGTGAACGAATGGAAGAAGCCGATGTTATATTTCATGGTCTAGTTAGCAGAAATGAAGTGTCTTGGAA TACTTTGATTGCTGCCCATGCTCGAAAGGGGGAGGCAGAGCATGCTTTTCGGTTATTCTCGAACATGCTGAGGGAAAATGTTCAGCCAACTCAATTTACT TATTCCAGCATTCTTAATGCCTGTGCTGTAATTGGTTCTTTGGAGCAAGGCAAGTGGATCCACGCCGTTTTGATCAAGTCGCAAGCAAAGCTGGTTGGTT TCGTTGGTAACACTTTGCTGGACATGTATGCTAAATCAGGAAGCCTCGAGGAAGCGATGAAAGTTTTCGATAGACTGTTGAAACGAGATATTGTTTCCTG GAATACATTGCTGAAAGGTTATGCCCAGCATGGACTTGGAAAGTCAGCGTTGCGAATTTTCGAAAAGATGTTGAACATAGGAATTGCTCCTAATGAAATA ACTTTCCTGTGTGTTCTTACTGCTTGTAGCCATGCGGGACTTGTGGATGAAGGTTTCGATATCTTCGGTCAGATGAAGAAGTATAACATGGAGCCTGGAG TTTCGCATTATGTCACGATCGTTGATCTTTTCGGTCGAGCTGGTCGGCTCGAGCAAGCTGAGAAGTTCATCAGTGGAATGCCGATCGAGCCTACTGCTGC TGTGTGGGGAGCATTGCTTGGTGCTTGTAGGATGCACAAGAAGACGGAACTTGGTACTTATGCTGCTGAGCGTATTTTCGAACTCGATCCTTACGATTCC GGGCCCCATATGCTTCTGTATAACATCTATGCATCTGCTGGTAGATGGGCGGAAGCTACTAAAGTTAGAAAAATTATGAAAGAGAGTGGGGTGAAAAAGG AACCAGCTTGCAGTTGGGTGGAGATTGAGAATGAGGTCCATGTGTTTGTTGCAGATGATGATTCCCACCCGGATAGCGAAGAGATTCATGCAATGTGGGA GAATACCAGGTCGAAGATTAAGCAGATTGGATACAAACCAGATGCTAACCATGTGCTTTTGTGCTTGGACCAAAGAGAGAGGGAACTGAAGTTGCAGCAC CATAGTGAGAAGCTTGCTCTAGCATTTGCGCTTCTTAAGACGCCTCCTAGATCCACGATCCGCATAAAGAAGAACATCAGGGTCTGTGGAGATTGTCATT CCGCATTCAAGCTCGTTTCGAAGGTGGTGAACAGAGAGATTATTGTCCGAGATACCAACCGGTTTCATCACTTTCGATATGGTTCTTGTTCCTGTGGGGA TTACTGGTGA
AA sequence Show only first row Show all	>Lus10039117 pacid=23150625 polypeptide=Lus10039117 locus=Lus10039117.g ID=Lus10039117.BGIv1.0 annot-version=v1.0 MAIVIHIGRRHLHFRKFNPCFSIPRSSLSTSSSRPTSTDHHRHLPESDHLLRQEQVSCAIVQDHHLLRKSLQSSGTGLHVLDLIDHGSLEPDRSLYHALL KKCTRLGRLEEAKIVHSHLLNSRFSGDSVLFTTLINLYSKCGSLDDARHLFDEMPNCRDIVAWTALIAGFSQRDRPRDAIVMFRRMLALGLIPNEFTLSS VLKAASGLGLSGHANGMQLHSFALKLGYVSDVFVGSALVDMYARCERMEEADVIFHGLVSRNEVSWNTLIAAHARKGEAEHAFRLFSNMLRENVQPTQFT YSSILNACAVIGSLEQGKWIHAVLIKSQAKLVGFVGNTLLDMYAKSGSLEEAMKVFDRLLKRDIVSWNTLLKGYAQHGLGKSALRIFEKMLNIGIAPNEI TFLCVLTACSHAGLVDEGFDIFGQMKKYNMEPGVSHYVTIVDLFGRAGRLEQAEKFISGMPIEPTAAVWGALLGACRMHKKTELGTYAAERIFELDPYDS GPHMLLYNIYASAGRWAEATKVRKIMKESGVKKEPACSWVEIENEVHVFVADDDSHPDSEEIHAMWENTRSKIKQIGYKPDANHVLLCLDQRERELKLQH HSEKLALAFALLKTPPRSTIRIKKNIRVCGDCHSAFKLVSKVVNREIIVRDTNRFHHFRYGSCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10039117 [exp]	0	1
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	1.4	0.8046
AT4G15820			unknown protein		Lus10043415 [exp]	20.4	0.7955
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10005913 [exp]	33.2	0.7582
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	38.2	0.6945
AT3G04160			unknown protein		Lus10021983 [exp]	70.1	0.7310
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	71.8	0.6895
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	80.3	0.6670
AT2G03880		REME1	required for efficiency of mit...		Lus10022974 [exp]	85.2	0.6846
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	97.5	0.6742
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10017386 [exp]	100.7	0.7090

Compare expression of checked genes

Lus10039117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.