Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44150 422 / 8e-148 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT3G59960 330 / 7e-112 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT4G30860 204 / 5e-61 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT1G77300 146 / 3e-38 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT1G76710 122 / 9e-31 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT5G42400 89 / 9e-19 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT1G05830 84 / 3e-17 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 84 / 4e-17 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT4G27910 82 / 1e-16 SDG16, ATX4 SET domain protein 16 (.1) AT2G23740 82 / 2e-16 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038740 [exp] 676 / 0 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10003777 [exp] 196 / 5e-57 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1) Lus10016600 [exp] 138 / 2e-36 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10000967 [exp] 139 / 1e-35 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10028662 [exp] 138 / 2e-35 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10022483 [exp] 94 / 2e-20 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10016788 [exp] 91 / 1e-19 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10025172 [exp] 91 / 3e-19 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10012626 [exp] 90 / 4e-19 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G000400 [exp] 495 / 2e-176 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.007G147200 [exp] 488 / 9e-174 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.018G102100 [exp] 207 / 5e-62 AT4G30860 585 / 0.0 ASH1-related 3, SET domain group 4 (.1) Potri.005G182100 [exp] 140 / 3e-36 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G079100 [exp] 138 / 2e-35 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.005G195400 [exp] 134 / 5e-35 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.007G033000 [exp] 95 / 6e-21 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.002G001000 [exp] 92 / 7e-20 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G260100 [exp] 92 / 8e-20 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G129800 [exp] 88 / 1e-18 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10039118 pacid=23150259 polypeptide=Lus10039118 locus=Lus10039118.g ID=Lus10039118.BGIv1.0 annot-version=v1.0 ATGAAATTTTTAATTCTTGGTCAGAACATTGACGGTGGGCGGTTCAGAGAAGCATTCAATGCATTGGTGGAGCAACTAGGAGGAACTCCGGTTGAATTTG AACTTCCAGAGTGGTTGCTTAACAAAGCAAAGCCTCATTTGCCTTACACCTTCATCAAACGCAACATATATCTTACCAAGAGGATTAGAAGGCGGCTTGA GGACGATGGTATATTCTGTTCGTGTAATGCATCGCCTGGTTCTTCTGGGGTCTGCGGTAGAGATTGCCATTGCGGGATGTTGCTGTCCAGTTGCTCCTCG GGTTGCAAATGTGGGGAATCTTGTCTCAACAAACCATTTCACCAACGACCCATGAAGAAGATGAAAATGATACAGACTGATAAATGCGGAGTTGGGATTG TGGCTGATGAAGAAATAAATCAAGGAGAGTTTGTGATAGAGTATGTCGGAGAAGTTATTGATGATAAGACATGTGAAGAGCGACTATGGAGCATGAAGCA TCGCGGGGAAACAAACTTTTATCTGTGTGAAATTAACCGAAACATGGTTATTGATGCAACATACAAAGGAAACAAGTCAAGATACATAAACCATAGTTGC TGTCCTAATACCGAGATGCAGAAATGGATAATTGACGGGGAAACCAGAATTGGCATATTTGCAACTCGTGACATAAAAAAGGGCGAGCATCTGACTTACG ATTATCAGTTTGTACAATTTGGCGCAGATCAAGACTGCCACTGTGGGGCTGCCGACTGCAGGCGGAAGCTAGGTGTTAAGCCAACCAAGGCTAAGCTGTC GTCCGATGCAGCGTTACACCTGGTCACATGCCAGGTTGCAGTCTCCTCTCCCCGGATTAAAGCGATTCTGTCTGGGAAAAATGGTCTTCAAAATGGAAGA GTACATAAAGGGAGTTCAGGGTGTGCTAATGATAACCGGCAGTCTTACCATAGTTGCATCGGCAAAGTGATAAGAATAGTCTACTCCAAGAATGAAAGTT TCGGGATTATCAGACAGTTCGACAAGTATTCGAGAAAACACAAGATCATGCTCGAGGATGGTACTGTCATATTTGTCGACCTTACCAAAGTAGAATGGGA AATCTGTGATTCTGATTCCAGGTGA
AA sequence Show only first row Show all	>Lus10039118 pacid=23150259 polypeptide=Lus10039118 locus=Lus10039118.g ID=Lus10039118.BGIv1.0 annot-version=v1.0 MKFLILGQNIDGGRFREAFNALVEQLGGTPVEFELPEWLLNKAKPHLPYTFIKRNIYLTKRIRRRLEDDGIFCSCNASPGSSGVCGRDCHCGMLLSSCSS GCKCGESCLNKPFHQRPMKKMKMIQTDKCGVGIVADEEINQGEFVIEYVGEVIDDKTCEERLWSMKHRGETNFYLCEINRNMVIDATYKGNKSRYINHSC CPNTEMQKWIIDGETRIGIFATRDIKKGEHLTYDYQFVQFGADQDCHCGAADCRRKLGVKPTKAKLSSDAALHLVTCQVAVSSPRIKAILSGKNGLQNGR VHKGSSGCANDNRQSYHSCIGKVIRIVYSKNESFGIIRQFDKYSRKHKIMLEDGTVIFVDLTKVEWEICDSDSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Lus10039118 [exp]	0	1
AT1G27510			Protein of unknown function (D...		Lus10042125 [exp]	2.8	0.8384
AT2G25560			DNAJ heat shock N-terminal dom...		Lus10032540 [exp]	3.6	0.8441
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10012229 [exp]	8.1	0.8179
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10017944 [exp]	10.0	0.8041
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001953 [exp]	10.4	0.8204
AT3G48210			unknown protein		Lus10042089 [exp]	10.6	0.8272
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	11.2	0.8352
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10024200 [exp]	12.4	0.8112
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10033043 [exp]	13.2	0.8225
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	14.4	0.8131

Compare expression of checked genes

Lus10039118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.