Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47780 692 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 507 / 6e-173 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 452 / 3e-151 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G30575 367 / 2e-119 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT2G46480 356 / 4e-116 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT1G06780 348 / 2e-112 GAUT6 galacturonosyltransferase 6 (.1.2) AT3G25140 347 / 4e-112 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G18580 341 / 5e-110 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 336 / 5e-108 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT3G02350 315 / 1e-99 GAUT9 galacturonosyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038739 [exp] 968 / 0 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 515 / 4e-176 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 504 / 4e-172 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 503 / 8e-170 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 473 / 1e-154 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 471 / 3e-148 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014750 [exp] 394 / 5e-130 AT1G06780 611 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10033861 [exp] 384 / 5e-126 AT1G06780 568 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10024859 [exp] 370 / 1e-120 AT1G06780 630 / 0.0 galacturonosyltransferase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001700 [exp] 747 / 0 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 670 / 0 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 507 / 1e-172 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 500 / 5e-170 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 466 / 6e-157 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.005G218900 [exp] 402 / 1e-132 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2) Potri.002G246500 [exp] 346 / 6e-112 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.019G108900 [exp] 345 / 8e-112 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.015G060800 [exp] 341 / 3e-110 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.004G111000 [exp] 342 / 6e-110 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10039119 pacid=23150459 polypeptide=Lus10039119 locus=Lus10039119.g ID=Lus10039119.BGIv1.0 annot-version=v1.0 ATGATGATTCTGAGGAACGTGGTGGTGGTGATGCTATTCATCACTGTGATTTCTCCGATTGCTCTCTACACTGATAGATTCGCCGCCTTCGCTCCTTCTT CCAATTTGCAATCTCAAGACACAAGAGAGCACAAATATGCTAGAGTTTTGTCAGCAACCGATGAGCATGATCAGTCTCAACCGGATGCTGTCATCAAAAG GGTCACTGATAGTACCAAATCTAAGCACGAATCGAGAAGTGATGGCACGGATACCAAGCCCAAGGATCCGAAGTCCTCGACCTCTAACAGAGTAGCTCAC AATGCTTCTCAAGAACTGCTTGAGCAACAAGCTGCTGGGAACTCTGGCAAAGCTAGTGAAAAGGATCACCGAAAAGCGAAATCTGGAAAACAAACAGATC AAACTGTTGCTATGTCGGATGCTCGGGTACGTCAAATGAGAGATCAGCTGATCAGGGCAAAAGTATTCCTTTCACTTCCTGCGACAAACAATAATCCACA CTATACAAGGGATCTTAGAATGCGGGTGAAGGAAGTCACACGCGTTCTTGGAGAAGCAACTAAAGACTCAGAGCTGCCAAAGAATGCCGTTGAGAAAATG AAGGCAATGGAGCAGGCCCTAACAAAAGGCAAGCAGATACAAGATGACTGTGCCACTGGGGTAAAGAAACTCCGTGCAATGCTACATTCCACAGAGGAGC AGCTCCGTGTGCATAAAAAGCAGACCATGTTCTTGACACAGTTGACAGCAAAAACCCTTCCTAAGGGTCTTCATTGTCTTCCATTGCGTCTGACCACTGA GTATTATTCTTTGAATACTTCTCAACAACAGTTCCCAAATCAAGAAAAACTGGAAGACCCTCTGCTGTATCATTATGCTTTATTCTCAGATAATGTTCTG GCAGCTTCAGTTGTTGTGAACTCTACCATCACACATGCCAAGGAGCCTTCCAAGCATGTTTTCCACATTGTCACGGATAGACTGAATTATGCAGCGATGA GGATGTGGTTTGTGGTGAATCCACCCGGCAAGGGGACTATTCAAGTTCAAAATATCGAGGAGTTCACATGGTTAAATGCAAGTTACAGTCCTGTGCTGAA GCAGTTGGGATCTCCGTCAATGATAGACTACTATTTCAGGGCACATCGGGCTAATTCAGACCCGAATTTGAAGTATCGGAACCCAAAATACTTGTCCATC TTGAACCATCTCCGGTTCTACCTACCAGAGATATTCCCAAAGCTGAACAAGGTCTTGTTCGTGGATGACGATATAGTAGTGCAGAAGGACCTAGCTGGAC TTTGGGCCCTTGATTTGAAGGGTAATGTCAATGGTGCAGTGGAGACATGCGGAGAGAGCTTCCATCGGTTTGATCGATATCTCAACTTCTCGAATCCCCT GATCTCTAAGAACTTCCAGCCGCATGCATGTGGATGGGCATATGGGATGAATGTCTTTGATTTGGATCAGTGGAGGAGGAAAAACATCACCGAAGTGTAC CACAAGTGGCAGAAACTGAACATTGTGGAAGTTGGGGACACTGCCACCAGGGCTGATTACGTTCTGGAAACAAACACATCCACTGGACCGATCATGGCAC GTACTGGGACTGGGATACAACCCGAGCATGAACCAGAAGGAAATCGAGAGAGCAGCGGTGATACACTACAACGGGAACATGAAGCCGTGGCTGGAGATAG GGATACCGAAGTATCGTGGATACTGGGAGAAGTACGTGGATTACGAGCATGTCTATTTGAGGGAATGCAACATCAACCCTTGAATGGAAAGGAACACAAG GGTGAATGTCAGGTTACAGCACAGCCGGCGGGGGAGTATGTAGGTATTGTCGGTGGATAG
AA sequence Show only first row Show all	>Lus10039119 pacid=23150459 polypeptide=Lus10039119 locus=Lus10039119.g ID=Lus10039119.BGIv1.0 annot-version=v1.0 MMILRNVVVVMLFITVISPIALYTDRFAAFAPSSNLQSQDTREHKYARVLSATDEHDQSQPDAVIKRVTDSTKSKHESRSDGTDTKPKDPKSSTSNRVAH NASQELLEQQAAGNSGKASEKDHRKAKSGKQTDQTVAMSDARVRQMRDQLIRAKVFLSLPATNNNPHYTRDLRMRVKEVTRVLGEATKDSELPKNAVEKM KAMEQALTKGKQIQDDCATGVKKLRAMLHSTEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYSLNTSQQQFPNQEKLEDPLLYHYALFSDNVL AASVVVNSTITHAKEPSKHVFHIVTDRLNYAAMRMWFVVNPPGKGTIQVQNIEEFTWLNASYSPVLKQLGSPSMIDYYFRAHRANSDPNLKYRNPKYLSI LNHLRFYLPEIFPKLNKVLFVDDDIVVQKDLAGLWALDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFQPHACGWAYGMNVFDLDQWRRKNITEVY HKWQKLNIVEVGDTATRADYVLETNTSTGPIMARTGTGIQPEHEPEGNRESSGDTLQREHEAVAGDRDTEVSWILGEVRGLRACLFEGMQHQPLNGKEHK GECQVTAQPAGEYVGIVGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10039119 [exp]	0	1
AT1G71900			Protein of unknown function (D...		Lus10015480 [exp]	5.1	0.7744
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	7.2	0.7560
AT3G06240			F-box family protein (.1)		Lus10027824 [exp]	10.7	0.7323
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	14.7	0.7478
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10009856 [exp]	15.2	0.6950
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10018854 [exp]	16.7	0.7384
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10017356 [exp]	23.2	0.7266
AT2G38170		RCI4, ATCAX1, C...	RARE COLD INDUCIBLE 4, cation ...		Lus10004819 [exp]	24.7	0.6703
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	25.8	0.7274
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	28.1	0.7379

Compare expression of checked genes

Lus10039119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.