Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64620 57 / 2e-10 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT3G17152 48 / 3e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17150 44 / 2e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038738 [exp] 248 / 2e-85 AT5G64620 67 / 4e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10038737 [exp] 99 / 3e-26 AT5G64620 56 / 7e-10 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10027947 [exp] 53 / 8e-09 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 48 / 4e-07 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10022409 [exp] 44 / 2e-05 AT5G64620 155 / 3e-48 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10017345 [exp] 40 / 0.0002 AT3G17220 89 / 1e-22 pectin methylesterase inhibitor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G013400 [exp] 126 / 5e-37 AT5G64620 66 / 8e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.016G001600 [exp] 108 / 3e-30 AT5G64620 82 / 9e-20 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.008G102600 [exp] 51 / 3e-08 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G191500 [exp] 50 / 7e-08 AT2G31430 104 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G066300 [exp] 45 / 4e-06 ND / Potri.004G016500 [exp] 44 / 2e-05 AT4G02250 73 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.007G108301 [exp] 42 / 4e-05 AT5G64620 163 / 1e-51 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.006G134900 [exp] 42 / 4e-05 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.009G083500 [exp] 40 / 0.0002 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.010G209800 [exp] 39 / 0.0006 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10039120 pacid=23150612 polypeptide=Lus10039120 locus=Lus10039120.g ID=Lus10039120.BGIv1.0 annot-version=v1.0 ATGTCCACCTCCCTCCTCGTCCCGCTACTACTACTCCTTCTCATCTCAACAGCCGCCATCTCCATCGCCGCCGCACCGACGAACCTCGTCCAGCAACTCT GCAAGAAAACCTTTGCTTACGCGCTGTGCGTGGAGGCGCTGTACGCGGACTCCAGGACGCCGGACGCCGACCGGACCACCATGGCGTTCATCTCCGTCGG GCTGGCCTACCAGAACGCCACCGGTACCCGCACCTACATCTCCGGCCTTCACGGCGGCGGTCGGGTCGGGCGGGAGCGGCTCAGCAGATGCGGATCCGAC TACGACGTCGCGATCACTAAGATGGAGCGGGCCTCCAACGATTTGAATTCCGAGACGTACTACGGCCTGGCTGAGCTGGCAAAGGGAGCCGCCGACGCTG CCAAACACTGCCAGGCTGTATTCGCGAAGTCCACGTGGCAGCCCATGGGGAACCGGAACCGGGTGTTGGCGGTTTTGTGTGAGGTTATTGGGGTGATTGG GAAGTCCTTCACCGGCAAAGATTGA
AA sequence Show only first row Show all	>Lus10039120 pacid=23150612 polypeptide=Lus10039120 locus=Lus10039120.g ID=Lus10039120.BGIv1.0 annot-version=v1.0 MSTSLLVPLLLLLLISTAAISIAAAPTNLVQQLCKKTFAYALCVEALYADSRTPDADRTTMAFISVGLAYQNATGTRTYISGLHGGGRVGRERLSRCGSD YDVAITKMERASNDLNSETYYGLAELAKGAADAAKHCQAVFAKSTWQPMGNRNRVLAVLCEVIGVIGKSFTGKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10039120 [exp]	0	1
AT5G47040		LON2	lon protease 2 (.1)		Lus10001083 [exp]	3.9	0.8970
AT4G28240			Wound-responsive family protei...		Lus10031617 [exp]	7.2	0.8582
AT1G02610			RING/FYVE/PHD zinc finger supe...		Lus10010011 [exp]	13.0	0.8470
AT1G79720			Eukaryotic aspartyl protease f...		Lus10024098 [exp]	17.3	0.8382
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10041368 [exp]	18.8	0.8388
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10022260 [exp]	21.2	0.8011
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Lus10009909 [exp]	24.9	0.8512
AT3G02750			Protein phosphatase 2C family ...		Lus10021486 [exp]	25.7	0.8443
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10041906 [exp]	28.0	0.8376
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	28.5	0.8560

Compare expression of checked genes

Lus10039120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.