Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06530 1613 / 0 ARM repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008676 [exp] 3777 / 0 AT3G06530 1137 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10026144 [exp] 228 / 8e-69 AT3G06530 165 / 8e-48 ARM repeat superfamily protein (.1.2.3) Lus10008666 [exp] 94 / 3e-20 AT1G79400 162 / 3e-45 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151500 [exp] 2237 / 0 AT3G06530 1242 / 0.0 ARM repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08146 [flax] [poplar] BP28CT BP28CT (NUC211) domain PF12397 [flax] [poplar] U3snoRNP10 U3 small nucleolar RNA-associated protein 10
Representative CDS sequence Show only first row Show all	>Lus10039121 pacid=23150309 polypeptide=Lus10039121 locus=Lus10039121.g ID=Lus10039121.BGIv1.0 annot-version=v1.0 ATGGTATCCACTCTGGACTCGCAGTTACAGTCAGTTAAGTACGTTGCACAAGTTAGTGACATTGACTCTGGGAAGAGACCCATCACTCGGCCGTCTATTC TCTATGACGCTAAAGAAGCCGCCGACCTTGGTATCGACGATATCTACAAATTGGCAGCTCAAGGTCTCGAAGTGCTTATAGGTGTTGATGAACGGTATGC GAGCTATAAGAATGGTTTGTTTAGCATTAAAAGCAAGGATTTGGATAGAGAATTGATGCGGGAAGATGAAAATAGGCAGCTGAATGCATCAATCTATAGC TACTTACGCTTGCTCTCCGGGCATTTTCTTTTACCTGCATCACACAAGACGCTTGAATACTTGATACGCAGATACAAGATTCATGTATACAATGTCGACG ATGTGATTTTATGTGCCTTGCCTCATCATGACACCCCTGCTTTTGTTGGACTGGTTGAGTTAGTTGATACAAGAAATGGTAAGTGGAAGTTTCTGGATGG TGTCAAAAATTCTGGTGCTGCTCCACCTAGGAGCATATTCGTGCAGCAATCATTGCGTGATTTAGGAGTACTTGAGACTATCTGCAACTATGCATCCTCT TCGAAGAAGTTTCAGCCTTCAAAGCCTGTTATCTTCTTTTGCACAGCAGTTATCTTTGAAGCTTTGGGTTCTTCAACTGGAATCGGTAATGGTTTTGTGA AGAGAATCCTTCCGTTTGTTTTTTCTGGACTTCAGGTTGGTGGCAATGTGCCATCTGATCTCAGGGCTGGCTCCTTGATGATTGTTGGGTTGCTAGCCAG TAAGGTTGCCTTGTCTCCTAAACTGGCTAAAAGTTTGATGCGATCAATTGCTGAAATAGCTCAGGAAGATGCCATGGAGTCCACTGACCTGCAGTGGTCT CGCTTACCAATATTGGCCATAATTAACCTTGTACAGTTGCAGTGTGTTGAAGTGATCTCAAAGAATACCTTGGAGATCCTGAAGGGAATTAGGGATATGC CTGCTATTCTTCTGGAATTGTCTAGAGAGTTCAATATAGACAGGTTCCTTGACCTGCTTGTACAATCTCTTCTTGAGTGCAGGTGTGAACTGGACTGTTA CCTTGTTATTCCTGCTGCTGATCATTCTCCTTTTACTGACAATTTCCTTGTTTCTAGCTTATCTGATGAGTCATACCATGATGCTCTTGCACTCATACTG GAAAAAGTTCCCATAGAAAAGTTTGTTGACCGTATGGTCTTGACCATTCTTTCGCGCTGCTTGAAACTTTCTCAAAAGAATCATGGCTCCAAGTCATCTG AAGCAGGAAGGTGGGCAAAGGATATCTTAGTGGTTATTAATAAGAATTATCCAGCTGAACTTCGTCAAGCAGTTTGCATGTTTCTAGAGGATACTAAAGT ACAGGGCAAGAAAGAAGCCACAGTTATTGAGCTTCTGAGTGGAACATTGGAAGGAAATTTGGATTTGCCATCAGTGATCTCAGATTCAAAAATCTTGTTC GGTCTGCATCATCCTAAGGCAGCCGTACGACGTGCGACATTGTTTAGTTTAGGCACATCAGGAGTTTTGAAAGATGACTGTGCTGTTTCGCAGGATGCTG TATTAAACCAGCTAAAGGATGAAGACCTTTCTGTAGTTCAGGCAGCCTTATCCATTGATGGATTGTCGGACATAATGTGTTCTTCTGATATTCTCGAAGC TTTAGACCTTGTGCTAAAAAGATGTGTTGGGTCACTAAGGTCAGGTCCGTCTGAGGAAAATTCCTTAGCTTGTGATGTTGCTGTTTCATTTATCACAATT GCCATCTCCGCCTCCCACAACTGTGCGTGTATGTCGAAGGAACTTGCCTCAATGCTGTTCCCACTGCTTCTGATATCTCCCAAGACATTGAGGCTGAATT TAAAGGTCCTGCAATTAGCAAAAGAGCTAAAATGGGATCTGTATCACAATCTTCCAAATGTCACAGCTGAAGAGGTGAAACTGGAACAGGAGATCATTTC TTCTATTAATCTGAAGATGGTCAGCAACCTGTGTGAAGCTTTTTCAATGGATCCGACTAAGCATATGCCCTGGCTTATTAAGAATTGTGATAACTCAGAT CTTTCAAGGACGCTAACTCTCCTAGTAGTGATGGAGTCATTTTTGAAGTCAAAGAATGAGATCAAGTCTTCATCAGCACTCTTTGAAGCGTGTTTTTCTT TTCTAAGAGCTGAATCGAAGGCATTGGTGGGCAATGTTTCCATGTTTGAGTTCAATAAAGAAGTGCTTCAGTGGGACTGCAGAAAGTTCCTTGATCAGCT GTTTGCCATTCCTCTTTCGAAGCTGAATACAAATACTTTGATTTGTGTCTTTTGGAGATTACTAGATGCGCTCCCAGTGGCTGCTTCGGATGTTTATAAG GAGGAGGTGACTAGAAAACTCAGGGACTTGTTTGTATTTTTTGCAACTTCTCCGGCCAAAAATGTTTTCAGGGAACATCTTTTCCGCCTTGTTACAAACT GCAGCACGTCTCCTATTGATTTTCTGTTGGGTTTTTTCACGGAAGAAGATGTTCCTCTTCCTGTTCAAATGGAGATCCTCCACTCGTTTTCACATCTTTG TGTTGAGCCAGATGATAGATTGACATTTCAACTCCTTGCCAACTTCCCTTTGGTCCTTGTTCCACTTTCTTCTGAAGACCAGGAATTGAGAGTTACTGCG GTAGGCTGCATTGAAGCGCTCTCTGGACTGTCTCGTCGCGTTGACTTGTTGAGCAAGAAAAATGGAAACAATGGCAATTGGATAAGTTTTGTTGTCGACC TTTTGGGCTTCATTGTCCAGCAGAAGAGGCTCATACTGTCGGACAAAAACTACTTACCATCGTTCTTTACATCTTTGCTTGGATCATGTTCTGGTGGTCT TCTGGTTCCTCGAAGTGTTGAACAGAGATTCAATGAATCAACAAAAGAGCAGATCCTTGCATTTATATTGGGTTATGGCCTTCAACTGCCTACATTTGCC AAGGTGATGATTGTATCTTTGCTCAAAGGTCTGGGCAATAGGATAATGCACAACAAAGATGCTGACGAACTGTTGTCACAACTTCTAGAGAGACGGAGAC AAATTTATATGGAGCGAAATCAGCCGAGTAAAAAGTTATCCAAAAGCGAAATCAAGATCATGTGCCTTCTACTAGAGATATGTGCCACAAGAACATCTAC CGCAGGGCACCCATGTGAAGAGTATCTGTTCAATGCTTTGCATTTGAATGGGAGCGCTTCAGGGGAATTAGCCATTGTAGAACCTTGCACGACTGTTTTG CAGAGTATAGATTGCCAATATTACTTGGAGATGACACCTGATAAACAGCGGCTTCTGTTCCGTGAGCTTTTATGTTTGTCCCGGCATGCTGATGCGCAGT TACAGAATGCTAGCAGGGCGGCATTCCCGCGATTAAATATTTCTCCCTCCACTGTGGCCCAGACACTTGATTTCTTCCTGAAGTCAGAAGGTCATAGAAC TGGGTCATCACATGGGAAGAAGAAGATGAAGAAAGAAACACACCAAATGTCCATCTCTGATCACGACCTCCTTCGTGAAGAGGGAACATTGTTATCTTCA TTAAGCTCGCTCCTCGAATTTTTAATACTGAAGAAAGATGTGACTAAGAGGGAGTTTCTCATAGGCCCTCTTTTTCAGCTTCTTGAGAGTATCTTTTTTG ATGAGGAGATGCTAGCTCTAGGTGAAAATGGGATCCAAGGTTCATCTAGCATTTCCCAGACAGTGCCGGCCACAATTCTGAACATTCAGCACACTTTGCT AATAGCATTGGAAGATATTATTTCGTCACTTGAATGTGGTGGTGTCCAATCAAAGGATTACGGAGCAGTTGAAGTGAAGGTTCTGATAAGATGTGCCCGT TCTGCAAAAGATGGAACTACTCGGAACCTTATTTTCTCGCTTTTGTCTTCCGTTGGGAAGGTCATCCCAGACAAGATTGTGCCACATATATTGGATATAC TTGTAGTGATTGGGGAATCAACAGTTACACAGTCAGACAGTCACTCGCAGCATGTGTTTGAACAACTTGTATCTGCTATCATTCCCCTCTGGCTCGGCGA GACTGGAAATATTGAAAAATTGCTCCAGATTTTCATCAATGTGATGCCTGATATTGCTGAGCACCGGAGGTTGTCACTTGTTGTGTACCTCTTAAGGGTA CTTGGAGAACAAAGTAGCTTGGCTACCTTACTTCTGCTTCTTTTCCAGTCCCTTATTTCTCGGAAAGGATTCACTTCATCCTGCAGTGGACAAAGTCTTG ATGATTATGAGGGTTCTATTTGGAGAGAATGGGAGTATTCTTTTGCCGTGCAGATATGTGAACAGTACTCGAGCACTATATGGCTTCCATCCCTTGTCAT GCTTCTAAAGCGGATAGAAGCAGATGGTTATAATCAAGAACTTCCAGTAAAAGTGCTATTTGCGATGGAATTCATTTTACACAAGTTGCAAGATCCCGAA TTCACTCTGAGGCTTCAGTCAAGCGAAGGCTTTAATAACATACAGGGTACACTCCAGGAACTAATGGAACATGCTGTTGCTACTTCACTGCTTGTTGACG TAAGAAGAAAGAAATTTCATGTACCCGCTGTAATGAAAAAAGAATTGAAAGATCGGGGGAATGCTGTCTTGAGAATTGTTAGAACAGCAATGGCGCCTTC TGCATATTTCAGAGGCATGGTCAGTTTATTGGGGAATTCGGATGGGAATGTGCAGAAAAAGGCTCTTGGACTTCTCTGTGAGACCCTTAAGGACTGTGAT TCTGTCAAAGCAAAGGGTAAGGGGAAACGTCACATAGGTGCGAGTTTGTGGCTTCATATGGACAAGGCATCAGTTAAATCTCTTAACAAAATGTGTTTAG AGATTGTTGGGATGGTTAATGGTACGGCAGAGGAATCAGATGAAACTCTGAAGATCTCAGCAGTTTCTACGCTGGAAGTGTTGGCCCGTAGCTTCCCTTC CAATCAATCTGTGTTTACTGTATGCCTTCCATGTGTGTCGAAAAGCATTGTGTCATCTAACTTGGCCTTGTCTTCTTGCTCTCTTCGGACTACTGGTGCT TTTATCGAGGTGATCGGGCTAAAAGCGTTAACTGAACTCCCCACCATAATTGGAAACATGATGGAGAAATCTCTCGAGGTTTCTGCTGGAGTATCCATTT CCGGGGAGGCTTTAATGCATGCAATCCTTGTTACATTGGAGCAAGTAATAAACAAACTTGGCGGTTTCCTGAACCCATATCTCGAAGACATTCTAAGACT ATTGGTGATTCATCCAATGTGCACATCTGTATCCCATGAAAAATTGAAGCTGAGAGCTGATATAGTACGAGGTCTACTCACTGAAAGGATTCCTATGCGG CTGGCTCTTCCGCCTTTGCTCAAGATATATGCTGATGCTGTTGGGTCTGGAGATTCAAGTGTGTCTATTGCGTTTGAGATTCTAGCTAGACTGGTTCACG CAATGGATAAACCATCTGTCCGGGGTTACTATGAAAAGATTTTCGACCTTTGCTTGTCTGCTTTAGATCTTCGTCATCAACACCCTGCATCAATTCGGAA CGTTGATGCTGTCGAAGAAAGTGTGATTAATGCTACTGTCACTCTGACTATGAAGTTGACAGAGACGATGTTCAAGCCTCTCTTGATACGAAGTATTGAA TGGGCAGAACCTGCTGATGACAATAGTTCCAGCACAAATGTGGATAGGGCCATAGCTTTCTATGGATTGATCAACAAACTTACCGATAGCCATCGGTCTC TTTTTGTTCCCTACTTCAAGTACTTGCTTGACGACTGTATATGCCATCTCACCGGTCTTCCGAGAAATGCCAATATTACTCGAAAGAAGAAAGCAAAGAC TCTGGACGTTGACAAGGACGATGAAGTCTCGCTCGAGAGCTGGCAGATCAGGGCATTGACTCTTTTGAAACCCCTCGTATCACAATTCACCATAGATCCG CCAGCTTCACTTCACAAGCATCCGAGCTTGCCATCGGTTGACGAAGTTGATGACCTGCTGGTGGGCTGCGTTGGACAAATGGCTGTGACTTCAGGATCTG ATCTTCTATGGAAGCCATTGAACCACGAGGTACTGATGCAAACTCAAAGCAGTAAGGAAAGGCCAAAACGTCTAGGACTGAGGACGGTGAAGTACCTGGT TGATAATCTGAAGGAAGAATACATGGTATTGCTGCCGGAGACTGTGCCGTTCCTCGCTCATTTGCTGGAGGATAGCGACGTAAGAAGTCTTGCACAGGAA GTTGCGAAGGAGATGGAGGTGGTGAGTGGCGAAAGCCTGCAGGAATACCTTTCTTGA
AA sequence Show only first row Show all	>Lus10039121 pacid=23150309 polypeptide=Lus10039121 locus=Lus10039121.g ID=Lus10039121.BGIv1.0 annot-version=v1.0 MVSTLDSQLQSVKYVAQVSDIDSGKRPITRPSILYDAKEAADLGIDDIYKLAAQGLEVLIGVDERYASYKNGLFSIKSKDLDRELMREDENRQLNASIYS YLRLLSGHFLLPASHKTLEYLIRRYKIHVYNVDDVILCALPHHDTPAFVGLVELVDTRNGKWKFLDGVKNSGAAPPRSIFVQQSLRDLGVLETICNYASS SKKFQPSKPVIFFCTAVIFEALGSSTGIGNGFVKRILPFVFSGLQVGGNVPSDLRAGSLMIVGLLASKVALSPKLAKSLMRSIAEIAQEDAMESTDLQWS RLPILAIINLVQLQCVEVISKNTLEILKGIRDMPAILLELSREFNIDRFLDLLVQSLLECRCELDCYLVIPAADHSPFTDNFLVSSLSDESYHDALALIL EKVPIEKFVDRMVLTILSRCLKLSQKNHGSKSSEAGRWAKDILVVINKNYPAELRQAVCMFLEDTKVQGKKEATVIELLSGTLEGNLDLPSVISDSKILF GLHHPKAAVRRATLFSLGTSGVLKDDCAVSQDAVLNQLKDEDLSVVQAALSIDGLSDIMCSSDILEALDLVLKRCVGSLRSGPSEENSLACDVAVSFITI AISASHNCACMSKELASMLFPLLLISPKTLRLNLKVLQLAKELKWDLYHNLPNVTAEEVKLEQEIISSINLKMVSNLCEAFSMDPTKHMPWLIKNCDNSD LSRTLTLLVVMESFLKSKNEIKSSSALFEACFSFLRAESKALVGNVSMFEFNKEVLQWDCRKFLDQLFAIPLSKLNTNTLICVFWRLLDALPVAASDVYK EEVTRKLRDLFVFFATSPAKNVFREHLFRLVTNCSTSPIDFLLGFFTEEDVPLPVQMEILHSFSHLCVEPDDRLTFQLLANFPLVLVPLSSEDQELRVTA VGCIEALSGLSRRVDLLSKKNGNNGNWISFVVDLLGFIVQQKRLILSDKNYLPSFFTSLLGSCSGGLLVPRSVEQRFNESTKEQILAFILGYGLQLPTFA KVMIVSLLKGLGNRIMHNKDADELLSQLLERRRQIYMERNQPSKKLSKSEIKIMCLLLEICATRTSTAGHPCEEYLFNALHLNGSASGELAIVEPCTTVL QSIDCQYYLEMTPDKQRLLFRELLCLSRHADAQLQNASRAAFPRLNISPSTVAQTLDFFLKSEGHRTGSSHGKKKMKKETHQMSISDHDLLREEGTLLSS LSSLLEFLILKKDVTKREFLIGPLFQLLESIFFDEEMLALGENGIQGSSSISQTVPATILNIQHTLLIALEDIISSLECGGVQSKDYGAVEVKVLIRCAR SAKDGTTRNLIFSLLSSVGKVIPDKIVPHILDILVVIGESTVTQSDSHSQHVFEQLVSAIIPLWLGETGNIEKLLQIFINVMPDIAEHRRLSLVVYLLRV LGEQSSLATLLLLLFQSLISRKGFTSSCSGQSLDDYEGSIWREWEYSFAVQICEQYSSTIWLPSLVMLLKRIEADGYNQELPVKVLFAMEFILHKLQDPE FTLRLQSSEGFNNIQGTLQELMEHAVATSLLVDVRRKKFHVPAVMKKELKDRGNAVLRIVRTAMAPSAYFRGMVSLLGNSDGNVQKKALGLLCETLKDCD SVKAKGKGKRHIGASLWLHMDKASVKSLNKMCLEIVGMVNGTAEESDETLKISAVSTLEVLARSFPSNQSVFTVCLPCVSKSIVSSNLALSSCSLRTTGA FIEVIGLKALTELPTIIGNMMEKSLEVSAGVSISGEALMHAILVTLEQVINKLGGFLNPYLEDILRLLVIHPMCTSVSHEKLKLRADIVRGLLTERIPMR LALPPLLKIYADAVGSGDSSVSIAFEILARLVHAMDKPSVRGYYEKIFDLCLSALDLRHQHPASIRNVDAVEESVINATVTLTMKLTETMFKPLLIRSIE WAEPADDNSSSTNVDRAIAFYGLINKLTDSHRSLFVPYFKYLLDDCICHLTGLPRNANITRKKKAKTLDVDKDDEVSLESWQIRALTLLKPLVSQFTIDP PASLHKHPSLPSVDEVDDLLVGCVGQMAVTSGSDLLWKPLNHEVLMQTQSSKERPKRLGLRTVKYLVDNLKEEYMVLLPETVPFLAHLLEDSDVRSLAQE VAKEMEVVSGESLQEYLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	0	1
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	1.0	0.9751
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	1.4	0.9580
AT4G30990			ARM repeat superfamily protein...		Lus10026222 [exp]	4.6	0.9407
AT4G38760			Protein of unknown function (D...		Lus10007578 [exp]	4.9	0.9475
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	5.5	0.9562
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10019797 [exp]	6.0	0.9278
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10026334 [exp]	6.3	0.9260
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	8.0	0.9296
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10037481 [exp]	8.8	0.9197
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003700 [exp]	9.7	0.9425

Compare expression of checked genes

Lus10039121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.