Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64810 515 / 0 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G57930 308 / 2e-101 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G61930 283 / 6e-92 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT3G21740 193 / 6e-58 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038736 [exp] 767 / 0 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10019959 [exp] 295 / 7e-96 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10005547 [exp] 273 / 6e-88 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041933 [exp] 264 / 1e-84 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10004105 [exp] 258 / 1e-82 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 263 / 4e-80 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10039659 [exp] 204 / 6e-62 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10041934 [exp] 135 / 3e-38 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10027182 [exp] 112 / 3e-28 AT3G21740 240 / 4e-78 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001400 [exp] 568 / 0 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.006G183900 [exp] 318 / 7e-105 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.018G106400 [exp] 314 / 2e-103 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.015G106200 [exp] 298 / 2e-97 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.017G037200 [exp] 201 / 6e-61 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [flax] [poplar] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10039122 pacid=23150487 polypeptide=Lus10039122 locus=Lus10039122.g ID=Lus10039122.BGIv1.0 annot-version=v1.0 ATGACTCTGTCCCTCCATTGGGTTCCTGCTTTCTCCTCAGTTGCATTTCCAGGAGATGCTCCTACTCTGAAGGTTGCAAGAGTGAGAAGAACGAGTTATA GCAACTTCTTCTGTGCAAGTAACAGTCAGAAGAACCCATCTGCGGGCAAAAATAAAGACTCGTTTTACCAAAATGTTGATTTACCGCCAGTACTACCTAA GAAGAAAAAGAAACCCTTTCCCGTCCCTTTCAAAAAAATCCAGCGGGCTGCGAGGGAGGACAGGAAGCTAGCACAGATGGGGATTGAGAAGCCACTCGAA CGTCCGAAAAACGGACTGCTCGTTCCTGAAATGGTTCCTACTGCATATGAGCTGCTTGATGCTTGGAAAGCTCTGATCAAAGGTGTTGCACAGCTCATGC ACGTCATTCCCGTATATGGTTGCAGCGAATGCTCAGAAGTTCATGTGGCTCACACTGGCCACGAAATCAAAAACTGTTTGGGATCTTCGAATTCGCGACG CTACGGCTTGCATTCATGGGCGAAAGGTACGATCAACGACATCATCATCCCCATCGAATCATACCATCTTTACGACCCCTTTGGGCGACGCATCAAGCAC GAAACACGGTTTGACCACGACAGGATTCCGGCAGTTGTAGAGCTCTGCATCCAAGCCGGCGTCGAAATACCAGAATACCCTTCAAGGAGGAGAACCAAAC CAATCAGAATGCTAGGAAAGAGAGTAATCGACAGAGGTGGCTTTGTCCAAGAGCCTAAGCCATGGAGTTTCAGCAATCCATCATCATCGTCAGCCCTCTC CGACCTCGACACATATGGCGCTTCCTCCTCCGAACGATTCCCACAGCCCGATTCACAAGACATTCCTCAAATCGCACAGGAAACCGTTGAGGCCTACGAG AATGTGAGGCGGGGGGTGAGGAAGCTGATGAGGAAGTACACCGTGAAGGCATGCGGTTACTGCACGGAGGTTCACGTAGGACCTTGGGGTCACAATGCGA AGCTGTGTGGGGAGTTCAAGCATCAATGGAGAGACGGGAAGCACGGGTGGCAGGATGCGACACCGGAGGAAGTATTCCCACCGAATTATGTGTGGCATGT TAGGGAACCAAAGGGACCTCCGTTGAAGAGCTTTCTGAAGAGGTTTTACGGTAAGGCTCCTGCTGTGATTGAGATGTGCTTGCAGGCTGGAGCTGAGATT CCTGAGAGGTATAAGCCTATGATGAGGCTTGATATCATAATCCCTGAAGACGATGAAGCGAATCTAGTTGCATAA
AA sequence Show only first row Show all	>Lus10039122 pacid=23150487 polypeptide=Lus10039122 locus=Lus10039122.g ID=Lus10039122.BGIv1.0 annot-version=v1.0 MTLSLHWVPAFSSVAFPGDAPTLKVARVRRTSYSNFFCASNSQKNPSAGKNKDSFYQNVDLPPVLPKKKKKPFPVPFKKIQRAAREDRKLAQMGIEKPLE RPKNGLLVPEMVPTAYELLDAWKALIKGVAQLMHVIPVYGCSECSEVHVAHTGHEIKNCLGSSNSRRYGLHSWAKGTINDIIIPIESYHLYDPFGRRIKH ETRFDHDRIPAVVELCIQAGVEIPEYPSRRRTKPIRMLGKRVIDRGGFVQEPKPWSFSNPSSSSALSDLDTYGASSSERFPQPDSQDIPQIAQETVEAYE NVRRGVRKLMRKYTVKACGYCTEVHVGPWGHNAKLCGEFKHQWRDGKHGWQDATPEEVFPPNYVWHVREPKGPPLKSFLKRFYGKAPAVIEMCLQAGAEI PERYKPMMRLDIIIPEDDEANLVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	0	1
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10036431 [exp]	1.4	0.8741
AT2G39170			unknown protein		Lus10040608 [exp]	2.4	0.8564
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10029347 [exp]	3.2	0.8650
AT1G36390			Co-chaperone GrpE family prote...		Lus10024760 [exp]	4.5	0.8484
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10035697 [exp]	4.7	0.8275
AT1G55805			BolA-like family protein (.1)		Lus10002318 [exp]	5.2	0.8348
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029753 [exp]	5.8	0.8199
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018728 [exp]	7.2	0.8550
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	11.3	0.8200
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10006517 [exp]	11.4	0.7815

Compare expression of checked genes

Lus10039122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.