Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17150 530 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G14290 385 / 5e-128 alpha/beta-Hydrolases superfamily protein (.1) AT3G23540 379 / 1e-125 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G47590 48 / 1e-05 alpha/beta-Hydrolases superfamily protein (.1) AT3G47560 42 / 0.0005 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038733 [exp] 657 / 0 AT4G17150 469 / 1e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001114 [exp] 390 / 5e-130 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10021948 [exp] 388 / 1e-128 AT4G14290 674 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041237 [exp] 382 / 1e-126 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 360 / 6e-118 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10027619 [exp] 44 / 0.0002 AT5G20520 479 / 4e-172 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10011949 [exp] 43 / 0.0005 AT5G20520 437 / 1e-155 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001000 [exp] 670 / 0 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G000700 [exp] 659 / 0 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G029200 [exp] 381 / 5e-126 AT4G14290 680 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G200400 [exp] 367 / 1e-120 AT4G14290 672 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10039125 pacid=23150524 polypeptide=Lus10039125 locus=Lus10039125.g ID=Lus10039125.BGIv1.0 annot-version=v1.0 ATGATTGAACAGTTCATCAATTTTGTCATCCGCCCTCCAAGGGCGGATTATAATCCAGATCAGTACCTATGGGAAAAGGATTTCACACTAGCTAGTAGAG CCTACAAACGGCAAGACTTAGAGGCAACTTTGCTTGCACATTCTTTTGCTTTCTGCAGCTTACAAACACGAGGGGTCATACGTTACAGTGTAGCCACTAC GTGCCTTCGCCTTTTCCTGAAGATACTCCGCTTCCTTGTGTTATCTACTGCCATGGAAATAGGTAAGGCATTGCTGCATTTTCTGCGAAGCATAATGCTT TTCCAAACGTTGCCAGAGGTGATGCCTGTTTATAAATGCAGTGGCTGTAGGGCAGATGCGAATGAGGCTGCTGTAATTCTTCTTCCGACGAATATTACTG TTTTCACGTTGGACTTTTCGGGATCCGGCTTGTCTGATGGTGAATATGTTAGCCTTGGTTGGCATGAGAAAGATGACCTTAAGGCTGCGGTTTCTTATTT AAGAAGCAAGAAGAATATATCGTGTATTGGGCTTTGGGGACGATCAATGGGTGCTGTCACTAGCATTCTTTATGGAGCAGAAGATCCGTCTATAGCTGGA ATGGTGCTGGACAGTGCCTTCTCGAATTTATTTGATCTCATGATGGAACTTGTAGACGTCTACAAAATTCGGCTGCCAAAGTTCACTGTTAAGATGGCGT TGCAGTACATGCGGCGGGTGATTCAGAAAAAGGCAAAATTTGACATAATGGATCTCAACAGTCTAAAGGTTGCTCCTAAATCATTCATTCCCGCTTTGTT TGGTCATGCAAGTGATGACAAGTTCATACAATCCCATCATTCGGACATCATCTTCAAATCTTATGCAGGTGACAAAAATATGATAAAGTTTGATGGTGAC CACAACTCATCACGGCCACAATTCTATTACGATTCTGTCTCCATTTTCTTCTTCAATGTCCTTCATCCTCCTCAAACTACTGTTTCTGCGGTGAAGCTTG ATAAATATTATAACCTCTCAGACTTGAAGCTTGGTGGTGACTTGGATGAGAGTCTTCTCTACGAGATAATTGCAGGCATCCGTTCTTCAACTACTGATGC TGCAAGTTCATCTTCTGCTCCTCCTAGCATCACAACAGCAAAACCTGTCGATAAACTTCTTCTTGAAGTTGCCCCTGCCGTTAACTTAGTAATACCGGAG GCAGTTGGTGGCACAAATGATAAGGGCAGCAGCTACAATGAGCCACTAAATTCGCAGGATAAGCCAAATGACCAGAGCGAGGAATGCTGCTCCTATACAA GCTCAAACCGAGAGAGTTGGGGAAGATGCTCGTCTCTCGGTGGCAGCGATGAAGAATCTTCTGCTGAATGTCGAACTGTAGATAAAAGTCACGAGAGTTC TGCTCTAAGGGCATTTGCCACGCCACTACGGAACATACGAAAGAAGAAACCAGCGGCCGGAGGAGTCACTACCACTGCAGCAGTGCCTCAAACGGAACAG AAAAAGAAATCGAAGAAATCTTCGCTCAGGAAGATGAAGGGCGAGAAGCTAGAAAAGCTCGAAGCTTTAAGCAAACGGCTGCGCCATTGTATTCTAAGAC GAGTAAATCATAAGAGACATCTTTCTTCTTGA
AA sequence Show only first row Show all	>Lus10039125 pacid=23150524 polypeptide=Lus10039125 locus=Lus10039125.g ID=Lus10039125.BGIv1.0 annot-version=v1.0 MIEQFINFVIRPPRADYNPDQYLWEKDFTLASRAYKRQDLEATLLAHSFAFCSLQTRGVIRYSVATTCLRLFLKILRFLVLSTAMEIGKALLHFLRSIML FQTLPEVMPVYKCSGCRADANEAAVILLPTNITVFTLDFSGSGLSDGEYVSLGWHEKDDLKAAVSYLRSKKNISCIGLWGRSMGAVTSILYGAEDPSIAG MVLDSAFSNLFDLMMELVDVYKIRLPKFTVKMALQYMRRVIQKKAKFDIMDLNSLKVAPKSFIPALFGHASDDKFIQSHHSDIIFKSYAGDKNMIKFDGD HNSSRPQFYYDSVSIFFFNVLHPPQTTVSAVKLDKYYNLSDLKLGGDLDESLLYEIIAGIRSSTTDAASSSSAPPSITTAKPVDKLLLEVAPAVNLVIPE AVGGTNDKGSSYNEPLNSQDKPNDQSEECCSYTSSNRESWGRCSSLGGSDEESSAECRTVDKSHESSALRAFATPLRNIRKKKPAAGGVTTTAAVPQTEQ KKKSKKSSLRKMKGEKLEKLEALSKRLRHCILRRVNHKRHLSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10039125 [exp]	0	1
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10018362 [exp]	1.0	0.8418
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10039021 [exp]	3.5	0.7988
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10004944 [exp]	3.9	0.8066
AT3G18050			unknown protein		Lus10027253 [exp]	4.0	0.8176
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042203 [exp]	4.9	0.8161
AT2G41990			unknown protein		Lus10003341 [exp]	6.3	0.8107
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10030628 [exp]	6.9	0.7776
					Lus10017544 [exp]	8.0	0.7703
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	13.7	0.7963
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	14.3	0.7213

Compare expression of checked genes

Lus10039125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.