Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 138 / 3e-38 Eukaryotic aspartyl protease family protein (.1) AT1G01300 128 / 1e-34 Eukaryotic aspartyl protease family protein (.1) AT3G18490 128 / 2e-34 Eukaryotic aspartyl protease family protein (.1) AT5G10760 116 / 3e-30 Eukaryotic aspartyl protease family protein (.1) AT3G61820 113 / 5e-29 Eukaryotic aspartyl protease family protein (.1) AT1G25510 112 / 9e-29 Eukaryotic aspartyl protease family protein (.1) AT5G33340 107 / 5e-27 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 106 / 1e-26 Eukaryotic aspartyl protease family protein (.1) AT2G03200 105 / 5e-26 Eukaryotic aspartyl protease family protein (.1) AT3G20015 101 / 7e-25 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038732 [exp] 295 / 5e-99 AT5G10770 210 / 5e-63 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 133 / 3e-36 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 132 / 4e-36 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 126 / 2e-34 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10026244 [exp] 124 / 8e-33 AT5G10770 303 / 5e-98 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 120 / 4e-31 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10026243 [exp] 117 / 8e-31 AT5G10770 287 / 2e-92 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 112 / 1e-28 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10035668 [exp] 110 / 4e-28 AT2G35615 385 / 1e-130 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G000600 [exp] 241 / 9e-78 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 130 / 2e-35 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 127 / 3e-34 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 126 / 9e-34 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 123 / 2e-32 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 121 / 5e-32 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 122 / 6e-32 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 120 / 6e-32 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 120 / 1e-31 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 117 / 3e-30 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10039126 pacid=23150441 polypeptide=Lus10039126 locus=Lus10039126.g ID=Lus10039126.BGIv1.0 annot-version=v1.0 ATGTCGATCGGGTCGGGCAACTACTACGCGAAGCTGGGGCTGGGGACGCCGGCGAAGTACTACGCGATGCTGATGGACACGGGGAGCTCGCTGTCGTGGC TGCAGTGCAAGCCGTGCGTGATCTCGTGCCACCAGCAGGCGGACCCGGTGTTCGACCCCTCTGCTTCGAAGACGTACAGGAAGCTACAGTGCACCAGCAG GGAGTGTTCTTCGCTGAAGGCGGCGACGCTGAACGATCCGGCGTGCGAGGCGGAATCGAATGCTTGCGTCTACACGGCTAGCTATGGGGACGCGTCGTAC TCGATCGGGTATTTGAGCCAGGATGTGCTGACCGTTGATTCAAAAAGTGCGGTGGTGCCTAAGTTTACTTACGGGTGTGGGCAGGATAACCAAGGACTCT TTGGTAAGGCCGATGGAATCGTCGGTTTGGCGCCCGGATTTATCAAGGGGAAGTTGAACTACGTGGCGGCTGCGGCCCCCGCCGTCGGGCTCGTGTTTCA GGGAGGGTCGATCCTAGATGTGAAGGCAGGGAATCTTCTGGTGGATATTCCTGAGGAAGGGATTAGTTGTTTGGCAGTGGCGAGGAGCTCGTCGATATCG ATCATTGGGAATCGGCAGCAGCAGACGATGAATGTTGCTTATGATGTTGGGAATTCCAGGATTGGGTTCGCACCTGGCGGATGCCGTTGA
AA sequence Show only first row Show all	>Lus10039126 pacid=23150441 polypeptide=Lus10039126 locus=Lus10039126.g ID=Lus10039126.BGIv1.0 annot-version=v1.0 MSIGSGNYYAKLGLGTPAKYYAMLMDTGSSLSWLQCKPCVISCHQQADPVFDPSASKTYRKLQCTSRECSSLKAATLNDPACEAESNACVYTASYGDASY SIGYLSQDVLTVDSKSAVVPKFTYGCGQDNQGLFGKADGIVGLAPGFIKGKLNYVAAAAPAVGLVFQGGSILDVKAGNLLVDIPEEGISCLAVARSSSIS IIGNRQQQTMNVAYDVGNSRIGFAPGGCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01300			Eukaryotic aspartyl protease f...		Lus10039126 [exp]	0	1
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006249 [exp]	1.7	0.9614
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	2.4	0.9328
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	5.5	0.9309
AT5G25840			Protein of unknown function (D...		Lus10037569 [exp]	7.1	0.8851
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	8.2	0.9304
					Lus10026628 [exp]	8.5	0.9114
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	9.2	0.9260
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	9.5	0.9262
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	13.5	0.9118
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002500 [exp]	14.4	0.8354

Compare expression of checked genes

Lus10039126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.